Os03g0807400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calreticulin 2 precursor.
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Os03g0807400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Calreticulin 2 precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.1 | 0.382 | 9.56 | -0.504 | 1.04 | -1.04 | -0.68 | -1.87 | -0.391 | 20 | 29.17 | 231 | -- | -- |
| 70.24 | 0.39 | 9.6 | -0.791 | 1.04 | -1.07 | -0.649 | -- | -0.454 | 20.1 | 30.46 | 230 | -- | -- |
| 67.13 | 0.382 | 9.56 | -0.493 | 1.08 | -1.04 | -- | -1.83 | -0.395 | 20.2 | 29.3 | 176 | -- | -- |
| 71.09 | 0.393 | 9.6 | -0.804 | 1.05 | -1.02 | -- | -- | -0.469 | 20 | 29.9 | 218 | -- | -- |
| 112.78 | 0.495 | 9.57 | -0.793 | -- | -1.83 | -- | -1.17 | -0.501 | -- | 58.14 | 492 | -- | -- |
| 84.64 | 0.431 | 9.56 | -0.566 | 1.24 | -- | -0.433 | -- | -0.266 | 19.2 | -- | -- | -- | -- |
| 85.14 | 0.432 | 9.56 | -0.557 | 1.24 | -- | -- | -- | -0.266 | 19.2 | -- | -- | -- | -- |
| 113.75 | 0.497 | 9.59 | -0.99 | -- | -1.86 | -- | -- | -0.554 | -- | 90.79 | 498 | -- | -- |
| 86.77 | 0.434 | 9.56 | -- | 1.13 | -0.771 | -- | -- | -0.294 | 19.8 | 38.56 | 138 | -- | -- |
| 166.37 | 0.603 | 9.53 | -0.579 | -- | -- | -- | -- | -0.288 | -- | -- | -- | -- | -- |
| 93.31 | 0.452 | 9.54 | -- | 1.24 | -- | -- | -- | -0.204 | 19.2 | -- | -- | -- | -- |
| 137.48 | 0.546 | 9.56 | -- | -- | -1.51 | -- | -- | -0.403 | -- | 55.07 | 465 | -- | -- |
| 175.23 | 0.618 | 9.52 | -- | -- | -- | -- | -- | -0.224 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.19 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 13 |
| 7 | 60.88 | temperature | 20 | 270 | > th | dose dependent | sin | 6 | NA |
| 12 | 61.68 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 15 | 61.87 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 19 |
| 21 | 62.14 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 28 | 62.49 | temperature | 30 | 270 | < th | dose dependent | sin | 6 | NA |
| 43 | 63.04 | temperature | 30 | 90 | < th | dose dependent | sin | 4 | NA |
| 48 | 63.14 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 18 |
| 65 | 63.46 | temperature | 10 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 67 | 63.50 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 13 |
| 74 | 63.69 | temperature | 25 | 270 | > th | dose independent | sin | 5 | NA |
| 79 | 63.74 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 20 |
| 100 | 64.00 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 13 |
| 123 | 64.30 | temperature | 25 | 270 | < th | dose independent | sin | 5 | NA |
| 180 | 64.83 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 21 |
| 214 | 65.18 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 292 | 65.82 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 406 | 66.47 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 16 |
| 409 | 66.48 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 419 | 66.53 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 431 | 66.59 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 468 | 66.70 | temperature | 25 | 90 | < th | dose independent | rect. | 5 | 12 |
| 474 | 66.72 | temperature | 25 | 90 | > th | dose independent | rect. | 7 | 12 |
| 495 | 66.79 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 9 |
| 509 | 66.82 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 16 |
| 537 | 66.95 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 21 |
| 627 | 67.24 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 12 |
| 650 | 67.30 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 675 | 67.39 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 747 | 67.56 | temperature | 25 | 270 | < th | dose independent | rect. | 17 | 23 |
| 800 | 67.69 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 813 | 67.74 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 10 |
| 815 | 67.75 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 825 | 67.77 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 872 | 67.92 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 976 | 68.25 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 23 |
| 998 | 68.30 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |