Os03g0805500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : AMP-dependent synthetase and ligase domain containing protein.
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Os03g0805500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : AMP-dependent synthetase and ligase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.45 | 0.34 | 10.6 | -1.82 | 2.21 | 0.808 | 0.7 | -1.19 | -0.106 | 6.99 | 25.8 | 1345 | -- | -- |
| 52.72 | 0.338 | 10.6 | -1.49 | 2.21 | 0.685 | 0.715 | -- | 0.0109 | 6.97 | 26.7 | 1339 | -- | -- |
| 53.64 | 0.341 | 10.6 | -1.77 | 2.22 | 0.793 | -- | -1.15 | -0.0623 | 6.95 | 26.56 | 1370 | -- | -- |
| 53.95 | 0.342 | 10.6 | -1.47 | 2.21 | 0.666 | -- | -- | 0.0189 | 6.95 | 27.1 | 1359 | -- | -- |
| 308.93 | 0.819 | 10.6 | -1.51 | -- | 0.697 | -- | -0.067 | 0.0938 | -- | 29.6 | 5742 | -- | -- |
| 72.97 | 0.4 | 10.6 | -1.27 | 2.23 | -- | 0.744 | -- | 0.0203 | 6.83 | -- | -- | -- | -- |
| 74.39 | 0.404 | 10.6 | -1.26 | 2.24 | -- | -- | -- | 0.0182 | 6.82 | -- | -- | -- | -- |
| 302.35 | 0.81 | 10.6 | -1.38 | -- | 0.672 | -- | -- | 0.0667 | -- | 33.5 | 7086 | -- | -- |
| 106.19 | 0.48 | 10.5 | -- | 2.22 | 0.447 | -- | -- | 0.255 | 6.98 | 30.2 | 1167 | -- | -- |
| 336.31 | 0.857 | 10.6 | -1.21 | -- | -- | -- | -- | 0.0614 | -- | -- | -- | -- | -- |
| 115.92 | 0.504 | 10.5 | -- | 2.22 | -- | -- | -- | 0.158 | 6.85 | -- | -- | -- | -- |
| 353.12 | 0.875 | 10.6 | -- | -- | 0.541 | -- | -- | 0.177 | -- | 33.8 | 7084 | -- | -- |
| 374.68 | 0.903 | 10.6 | -- | -- | -- | -- | -- | 0.195 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.91 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 14 |
| 48 | 53.04 | temperature | 25 | 1440 | > th | dose dependent | sin | 22 | NA |
| 56 | 53.04 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 21 |
| 70 | 53.07 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 71 | 53.07 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 77 | 53.09 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 11 |
| 79 | 53.09 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 120 | 53.15 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 136 | 53.19 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 23 |
| 137 | 53.19 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 151 | 53.23 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 18 |
| 168 | 53.27 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 170 | 53.27 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 214 | 53.41 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 227 | 53.45 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 237 | 53.47 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 240 | 53.47 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 260 | 53.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 275 | 53.54 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 19 |
| 276 | 53.54 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 8 |
| 280 | 53.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 289 | 53.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 16 |
| 292 | 53.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 345 | 53.57 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 376 | 53.57 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 381 | 53.58 | temperature | 30 | 1440 | < th | dose independent | sin | 0 | NA |
| 408 | 53.61 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 455 | 53.67 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 460 | 53.68 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 13 |
| 467 | 53.68 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 20 |
| 472 | 53.69 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 543 | 53.76 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 11 |
| 546 | 53.76 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 550 | 53.77 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 7 |
| 559 | 53.78 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 564 | 53.78 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 568 | 53.79 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 680 | 53.80 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 758 | 53.85 | temperature | 30 | 1440 | > th | dose independent | sin | 21 | NA |
| 776 | 53.87 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 4 |
| 777 | 53.87 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 840 | 53.92 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 900 | 53.96 | temperature | 30 | 1440 | < th | dose independent | sin | 9 | NA |