Os03g0805400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Acid phosphatase/vanadium-dependent haloperoxidase family protein.
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Os03g0805400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Acid phosphatase/vanadium-dependent haloperoxidase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 111.99 | 0.497 | 9.19 | 1.61 | 0.997 | -1.32 | -1.31 | 0.775 | 0.64 | 4.39 | 81.38 | 1007 | -- | -- |
| 112.55 | 0.494 | 9.21 | 1.54 | 0.979 | -1.28 | -1.24 | -- | 0.617 | 4.37 | 82 | 979 | -- | -- |
| 116.59 | 0.503 | 9.19 | 1.6 | 0.99 | -1.29 | -- | 0.552 | 0.646 | 4.4 | 81.45 | 1008 | -- | -- |
| 116.94 | 0.504 | 9.19 | 1.56 | 1 | -1.24 | -- | -- | 0.644 | 4.49 | 81.92 | 1023 | -- | -- |
| 131.04 | 0.533 | 9.18 | 1.48 | -- | -1.59 | -- | 1.38 | 0.736 | -- | 103.8 | 467 | -- | -- |
| 140.76 | 0.556 | 9.18 | 1.39 | 1.03 | -- | -1.16 | -- | 0.676 | 5.67 | -- | -- | -- | -- |
| 144.01 | 0.562 | 9.18 | 1.39 | 1.02 | -- | -- | -- | 0.681 | 5.8 | -- | -- | -- | -- |
| 134.7 | 0.541 | 9.19 | 1.45 | -- | -1.54 | -- | -- | 0.732 | -- | 123.1 | 518 | -- | -- |
| 174.54 | 0.615 | 9.22 | -- | 0.933 | -1.18 | -- | -- | 0.543 | 4.11 | 95 | 901 | -- | -- |
| 198.08 | 0.658 | 9.19 | 1.42 | -- | -- | -- | -- | 0.705 | -- | -- | -- | -- | -- |
| 194.71 | 0.653 | 9.21 | -- | 1.04 | -- | -- | -- | 0.526 | 5.74 | -- | -- | -- | -- |
| 189.85 | 0.642 | 9.22 | -- | -- | -1.5 | -- | -- | 0.571 | -- | 164.4 | 494 | -- | -- |
| 251.14 | 0.74 | 9.23 | -- | -- | -- | -- | -- | 0.547 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 109.84 | humidity | 80 | 720 | < th | dose dependent | rect. | 14 | 8 |
| 9 | 110.16 | humidity | 80 | 720 | < th | dose dependent | rect. | 14 | 17 |
| 14 | 110.68 | humidity | 80 | 720 | < th | dose dependent | sin | 15 | NA |
| 22 | 110.86 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 3 |
| 37 | 111.38 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 45 | 111.54 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 4 |
| 60 | 111.90 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 80 | 112.25 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 85 | 112.32 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 21 |
| 91 | 112.40 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 5 |
| 96 | 112.48 | humidity | 70 | 720 | < th | dose independent | rect. | 14 | 18 |
| 102 | 112.54 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 13 |
| 104 | 112.55 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 11 |
| 108 | 112.56 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 18 |
| 127 | 112.77 | humidity | 70 | 720 | < th | dose independent | rect. | 14 | 6 |
| 139 | 112.78 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 144 | 112.82 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 147 | 112.84 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 148 | 112.84 | humidity | 50 | 720 | > th | dose dependent | rect. | 13 | 17 |
| 152 | 112.86 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 153 | 112.87 | humidity | 70 | 1440 | < th | dose independent | rect. | 12 | 7 |
| 166 | 112.96 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 182 | 112.98 | humidity | 70 | 720 | < th | dose independent | sin | 14 | NA |
| 199 | 113.07 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 200 | 113.08 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 21 |
| 203 | 113.09 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 209 | 113.11 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 225 | 113.16 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 20 |
| 296 | 113.43 | humidity | 70 | 720 | < th | dose independent | rect. | 16 | 3 |
| 332 | 113.54 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 368 | 113.67 | humidity | 50 | 720 | > th | dose dependent | rect. | 9 | 22 |
| 386 | 113.77 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 7 |
| 475 | 114.06 | humidity | 50 | 720 | > th | dose dependent | sin | 15 | NA |
| 490 | 114.11 | radiation | 10 | 1440 | < th | dose dependent | sin | 20 | NA |
| 498 | 114.14 | humidity | 70 | 720 | > th | dose independent | sin | 14 | NA |
| 581 | 114.32 | humidity | 70 | 1440 | > th | dose independent | sin | 18 | NA |
| 732 | 114.71 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 9 |
| 802 | 114.89 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 807 | 114.90 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 898 | 115.03 | humidity | 50 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 901 | 115.05 | humidity | 50 | 720 | > th | dose dependent | rect. | 24 | 23 |
| 940 | 115.11 | humidity | 80 | 1440 | < th | dose dependent | rect. | 2 | 18 |
| 981 | 115.21 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 23 |