Os03g0805200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RNA helicase (Fragment).
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Os03g0805200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RNA helicase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.56 | 0.337 | 9.21 | 0.345 | 1.48 | 1.09 | 0.729 | 0.162 | 0.257 | 15 | 22.5 | 1928 | -- | -- |
| 51.55 | 0.334 | 9.21 | 0.422 | 1.49 | 1.12 | 0.749 | -- | 0.265 | 15 | 22.26 | 1868 | -- | -- |
| 53.34 | 0.34 | 9.21 | 0.359 | 1.49 | 1.09 | -- | 0.161 | 0.258 | 15 | 22.45 | 1925 | -- | -- |
| 53.4 | 0.34 | 9.21 | 0.413 | 1.5 | 1.08 | -- | -- | 0.269 | 15 | 22.5 | 1876 | -- | -- |
| 155.34 | 0.58 | 9.19 | 0.503 | -- | 1.4 | -- | -0.02 | 0.318 | -- | 24.1 | 2536 | -- | -- |
| 98.14 | 0.464 | 9.29 | -0.0186 | 1.5 | -- | 0.676 | -- | -0.123 | 14.9 | -- | -- | -- | -- |
| 99.69 | 0.468 | 9.29 | -0.00289 | 1.5 | -- | -- | -- | -0.119 | 14.9 | -- | -- | -- | -- |
| 152.22 | 0.575 | 9.25 | 0.352 | -- | 1.25 | -- | -- | 0.295 | -- | 24.13 | 1030 | -- | -- |
| 57.38 | 0.353 | 9.21 | -- | 1.43 | 0.992 | -- | -- | 0.216 | 14.8 | 22.6 | 1476 | -- | -- |
| 230.18 | 0.709 | 9.3 | -0.067 | -- | -- | -- | -- | -0.157 | -- | -- | -- | -- | -- |
| 99.7 | 0.467 | 9.29 | -- | 1.5 | -- | -- | -- | -0.118 | 14.9 | -- | -- | -- | -- |
| 150.96 | 0.572 | 9.18 | -- | -- | 1.4 | -- | -- | 0.317 | -- | 24.7 | 1078 | -- | -- |
| 230.3 | 0.708 | 9.3 | -- | -- | -- | -- | -- | -0.15 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.64 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 18 | 51.06 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 21 |
| 38 | 51.81 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 20 |
| 56 | 52.41 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 60 | 52.44 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 22 |
| 62 | 52.47 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 65 | 52.54 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 98 | 52.78 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 100 | 52.80 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 118 | 52.88 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 139 | 52.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 22 |
| 140 | 52.98 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 4 |
| 146 | 53.00 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 170 | 53.05 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 184 | 53.08 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 267 | 53.32 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 325 | 53.46 | temperature | 10 | 1440 | > th | dose dependent | sin | 12 | NA |
| 346 | 53.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 503 | 53.83 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 568 | 53.96 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 957 | 54.65 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |