Os03g0804000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0804000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 135.59 | 0.547 | 3.13 | -0.32 | 0.472 | -0.718 | 0.331 | 1.83 | 0.0585 | 9.28 | 30 | 1517 | -- | -- |
| 135.84 | 0.543 | 3.11 | -0.0124 | 0.467 | -0.505 | 0.335 | -- | 0.03 | 9.26 | 29.6 | 1539 | -- | -- |
| 135.75 | 0.543 | 3.14 | -0.333 | 0.446 | -0.733 | -- | 1.81 | 0.0199 | 9.21 | 29.8 | 1538 | -- | -- |
| 136.17 | 0.543 | 3.1 | 0.0456 | 0.462 | -0.514 | -- | -- | 0.0318 | 9.17 | 29.6 | 1539 | -- | -- |
| 148.3 | 0.567 | 3.15 | -0.299 | -- | -0.679 | -- | 1.63 | 0.0104 | -- | 29.8 | 1517 | -- | -- |
| 147.39 | 0.569 | 3.11 | 0.191 | 0.455 | -- | 0.318 | -- | 0.0163 | 9.01 | -- | -- | -- | -- |
| 147.74 | 0.569 | 3.11 | 0.202 | 0.454 | -- | -- | -- | 0.0164 | 8.97 | -- | -- | -- | -- |
| 148.7 | 0.568 | 3.11 | 0.0578 | -- | -0.485 | -- | -- | 0.0421 | -- | 29.6 | 1519 | -- | -- |
| 136.21 | 0.544 | 3.1 | -- | 0.465 | -0.526 | -- | -- | 0.0292 | 9.12 | 29.6 | 1539 | -- | -- |
| 159.56 | 0.59 | 3.12 | 0.201 | -- | -- | -- | -- | 0.0193 | -- | -- | -- | -- | -- |
| 148.81 | 0.571 | 3.11 | -- | 0.455 | -- | -- | -- | -0.0061 | 8.93 | -- | -- | -- | -- |
| 148.74 | 0.568 | 3.12 | -- | -- | -0.502 | -- | -- | 0.0291 | -- | 29.7 | 1519 | -- | -- |
| 160.63 | 0.592 | 3.12 | -- | -- | -- | -- | -- | -0.00302 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 127.96 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 3 |
| 3 | 129.12 | temperature | 25 | 30 | > th | dose dependent | rect. | 5 | 5 |
| 7 | 129.31 | temperature | 25 | 30 | > th | dose dependent | rect. | 2 | 8 |
| 15 | 129.80 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 6 |
| 56 | 132.50 | temperature | 25 | 14400 | > th | dose dependent | rect. | 22 | 2 |
| 76 | 133.09 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 11 | 3 |
| 86 | 133.20 | temperature | 25 | 14400 | > th | dose dependent | rect. | 18 | 13 |
| 89 | 133.21 | temperature | 25 | 14400 | > th | dose dependent | rect. | 18 | 10 |
| 118 | 133.39 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 18 |
| 126 | 133.43 | temperature | 30 | 14400 | > th | dose independent | rect. | 16 | 18 |
| 127 | 133.43 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 22 |
| 129 | 133.44 | temperature | 30 | 14400 | < th | dose independent | sin | 11 | NA |
| 132 | 133.45 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 22 |
| 137 | 133.47 | temperature | 25 | 90 | > th | dose independent | rect. | 7 | 3 |
| 144 | 133.49 | temperature | 30 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 147 | 133.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 150 | 133.50 | temperature | 30 | 14400 | > th | dose independent | sin | 11 | NA |
| 161 | 133.54 | temperature | 30 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 166 | 133.56 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 170 | 133.59 | temperature | 30 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 171 | 133.59 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 13 |
| 181 | 133.60 | temperature | 30 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 198 | 133.63 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 12 |
| 205 | 133.65 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 10 |
| 224 | 133.67 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 314 | 133.67 | temperature | 30 | 14400 | > th | dose independent | rect. | 17 | 23 |
| 321 | 133.68 | temperature | 30 | 14400 | > th | dose independent | rect. | 11 | 23 |
| 353 | 133.70 | temperature | 30 | 14400 | > th | dose independent | sin | 1 | NA |
| 356 | 133.70 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 367 | 133.70 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 11 |
| 465 | 133.70 | temperature | 25 | 14400 | > th | dose dependent | sin | 11 | NA |
| 467 | 133.71 | temperature | 30 | 14400 | > th | dose independent | sin | 23 | NA |
| 484 | 133.71 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 23 |
| 485 | 133.71 | temperature | 30 | 14400 | < th | dose independent | rect. | 17 | 23 |
| 506 | 133.73 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 533 | 133.75 | temperature | 30 | 14400 | < th | dose independent | sin | 23 | NA |
| 544 | 133.76 | temperature | 30 | 14400 | < th | dose independent | sin | 21 | NA |
| 548 | 133.76 | temperature | 30 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 579 | 133.76 | temperature | 30 | 14400 | > th | dose dependent | rect. | 12 | 4 |
| 582 | 133.77 | temperature | 30 | 14400 | < th | dose independent | sin | 19 | NA |
| 585 | 133.77 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 628 | 133.78 | temperature | 25 | 14400 | > th | dose dependent | rect. | 2 | 6 |
| 653 | 133.80 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 10 |
| 661 | 133.80 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 662 | 133.80 | temperature | 25 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 664 | 133.80 | temperature | 30 | 14400 | > th | dose dependent | rect. | 12 | 22 |
| 665 | 133.81 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 5 |
| 799 | 133.85 | temperature | 30 | 14400 | > th | dose dependent | rect. | 9 | 7 |
| 830 | 133.87 | temperature | 30 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 831 | 133.87 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 837 | 133.87 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 845 | 133.88 | temperature | 30 | 14400 | > th | dose dependent | sin | 21 | NA |
| 906 | 133.89 | temperature | 30 | 14400 | > th | dose dependent | no | NA | NA |