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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0803300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.4 (0.547) R2 : 0.0813
β1 : 16.5 (2.64) R2dD : 20.6 R2D : -35.7
β2 : -- (--) R2dC : -- R2C : --
β3 : 132 (21) R2dE : 562 R2E : -575
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 637 (101) R2dD*E : 566 R2D*E : -552
γ1 : 0.0049 (0.0979) R2dN8 : 6.77e-06 R2N8 : -15
σ : 0.852
deviance : 334.34
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_____
C
peak time of C : --
E
wheather : wind
threshold : 7
memory length : 1467
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.81
open length of G : 0.616

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
332.77 0.85 6.37 16.4 0.0158 131 -0.602 631 0.00228 23.2 7 1442 3 1
361.42 0.892 2.97 -0.0859 0.0472 0.281 -0.702 -- -0.00576 23.9 7 1442 3 1
334.24 0.851 6.39 16.5 0.0419 132 -- 634 0.00605 19.1 7.007 1379 2.96 0.994
363.29 0.888 2.97 -0.0407 0.0515 0.181 -- -- 0.00517 23.1 6.924 1452 2.89 0.995
334.34 0.852 6.4 16.5 -- 132 -- 637 0.0049 -- 7 1467 2.81 0.616
361.5 0.891 2.97 -0.0885 0.0482 -- -0.706 -- -0.00692 24 -- -- -- --
363.65 0.893 2.97 -0.06 0.0526 -- -- -- -0.00346 23 -- -- -- --
363.45 0.888 2.97 -0.0397 -- 0.181 -- -- 0.00503 -- 6.929 1436 2.9 1.02
363.33 0.888 2.97 -- 0.0511 0.189 -- -- 0.00956 23 6.918 1437 2.85 1.12
363.83 0.891 2.97 -0.0588 -- -- -- -- -0.00306 -- -- -- -- --
363.75 0.892 2.97 -- 0.0521 -- -- -- 0.00322 22.9 -- -- -- --
363.5 0.888 2.97 -- -- 0.191 -- -- 0.00984 -- 6.933 1434 2.88 1.05
363.92 0.89 2.97 -- -- -- -- -- 0.00347 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 332.77 wind 7.0 1440 > th dose independent rect. 3 1
2 332.77 wind 7.0 1440 > th dose dependent rect. 3 1
11 333.74 wind 1.0 10 < th dose dependent rect. 23 3
12 333.89 wind 1.0 10 < th dose dependent rect. 13 13
45 337.46 wind 1.0 10 < th dose dependent rect. 5 22
46 337.48 wind 1.0 10 < th dose dependent rect. 6 20
53 337.83 wind 1.0 10 < th dose independent rect. 13 13
60 338.33 wind 1.0 10 < th dose independent rect. 23 3
70 339.25 wind 1.0 10 < th dose independent rect. 17 9
79 340.23 wind 1.0 10 < th dose dependent rect. 8 18
93 342.98 wind 1.0 10 < th dose independent rect. 6 20
94 343.28 wind 9.0 10 > th dose independent rect. 13 5
96 343.82 wind 9.0 10 > th dose dependent rect. 17 1
102 344.08 wind 1.0 10 < th dose independent rect. 8 1
104 344.08 wind 1.0 10 < th dose dependent rect. 8 1
106 344.55 wind 1.0 10 < th dose dependent sin 17 NA
109 346.08 wind 1.0 10 < th dose independent rect. 8 18
125 346.95 temperature 20.0 90 < th dose dependent rect. 1 1
129 347.11 temperature 20.0 10 < th dose dependent rect. 2 1
132 347.47 wind 7.0 10 > th dose independent rect. 12 17
138 347.49 wind 7.0 10 > th dose dependent rect. 12 6
141 347.57 wind 7.0 10 > th dose independent rect. 12 10
149 347.64 temperature 20.0 10 < th dose independent rect. 9 3
152 347.66 temperature 20.0 30 < th dose dependent rect. 9 3
162 347.74 humidity 50.0 90 < th dose dependent rect. 12 2
185 347.78 humidity 50.0 30 < th dose independent rect. 12 2
187 347.80 temperature 15.0 720 < th dose independent rect. 1 1
189 347.80 temperature 15.0 720 < th dose dependent rect. 1 1
192 347.81 wind 7.0 270 > th dose dependent rect. 12 3
202 347.89 humidity 50.0 10 < th dose dependent rect. 13 5
286 348.11 wind 1.0 10 < th dose dependent rect. 1 7
289 348.16 humidity 50.0 10 < th dose independent rect. 13 5
368 348.36 wind 7.0 10 > th dose dependent rect. 12 17
381 348.39 wind 7.0 10 > th dose dependent rect. 12 10
387 348.40 wind 1.0 90 < th dose independent rect. 6 7
391 348.44 temperature 20.0 90 < th dose independent rect. 24 1
432 348.47 wind 7.0 10 > th dose independent sin 15 NA
433 348.47 wind 9.0 10 > th dose independent rect. 15 3
440 348.48 precipitation 0.1 720 > th dose dependent rect. 17 1
442 348.48 temperature 15.0 720 < th dose dependent rect. 24 6
520 348.61 temperature 15.0 720 < th dose dependent rect. 21 4
554 348.74 wind 7.0 270 > th dose independent rect. 12 3
556 348.76 radiation 30.0 30 > th dose independent rect. 12 2
559 348.83 temperature 15.0 720 < th dose independent rect. 18 7
572 348.88 wind 1.0 90 < th dose independent rect. 6 2
578 349.00 humidity 50.0 90 < th dose dependent sin 7 NA
605 349.28 wind 1.0 90 < th dose independent rect. 6 5
638 349.41 wind 1.0 90 < th dose independent rect. 6 11
649 349.49 wind 7.0 10 > th dose dependent sin 15 NA
650 349.51 atmosphere 1015.0 4320 < th dose independent rect. 21 1
652 349.53 atmosphere 1015.0 4320 > th dose independent rect. 21 1
718 349.68 atmosphere 1010.0 1440 > th dose independent rect. 16 1
721 349.72 atmosphere 1010.0 30 < th dose independent rect. 13 23
730 349.79 wind 5.0 10 < th dose independent rect. 13 9
735 349.81 atmosphere 1010.0 1440 < th dose independent rect. 16 1
754 349.91 atmosphere 1005.0 1440 > th dose dependent rect. 17 2
758 349.92 humidity 50.0 10 < th dose dependent sin 13 NA
763 349.94 wind 1.0 270 < th dose dependent rect. 22 1
784 350.09 wind 7.0 10 < th dose independent rect. 13 23
821 350.19 radiation 20.0 90 > th dose dependent rect. 12 1
852 350.30 wind 1.0 10 < th dose dependent rect. 1 12
857 350.33 humidity 50.0 10 < th dose independent sin 14 NA
869 350.37 humidity 80.0 10 > th dose independent rect. 8 1
878 350.38 atmosphere 1010.0 10 > th dose dependent rect. 24 10
900 350.46 humidity 50.0 10 > th dose independent sin 13 NA
961 350.65 precipitation 0.1 720 > th dose independent rect. 17 1
966 350.67 wind 5.0 10 < th dose independent rect. 13 20
971 350.69 humidity 50.0 90 < th dose independent sin 7 NA
986 350.75 atmosphere 1000.0 1440 > th dose independent rect. 7 1
991 350.76 atmosphere 1010.0 30 < th dose independent rect. 3 9
993 350.76 atmosphere 1000.0 1440 < th dose dependent rect. 6 1
997 350.78 radiation 1.0 1440 > th dose dependent rect. 18 1