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Os03g0802500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : AAA ATPase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8 (0.0464) R2 : 0.565
β1 : 0.166 (0.169) R2dD : 0.00105 R2D : 0.00079
β2 : 1.26 (0.166) R2dC : 0.12 R2C : 0.338
β3 : -1.15 (0.123) R2dE : 0.183 R2E : 0.394
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 2.4 (0.348) R2dD*E : 0.0461 R2D*E : 0.0464
γ1 : 0.0652 (0.0985) R2dN8 : 0.000496 R2N8 : -0.00201
σ : 0.861
deviance : 342.09
__
_____
C
peak time of C : 21.5
E
wheather : radiation
threshold : 2.22
memory length : 38
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
340.2 0.867 7.99 0.128 1.24 -1.17 -1.06 1.75 0.0652 21.4 2.344 35 -- --
345.27 0.865 7.99 0.0347 1.3 -1.13 -2.92 -- 0.0471 21.6 2.52 34 -- --
342.09 0.861 8 0.166 1.26 -1.15 -- 2.4 0.0652 21.5 2.22 38 -- --
377.35 0.905 7.99 0.15 1.31 -1.12 -- -- 0.0619 21.5 2.511 34 -- --
379.74 0.908 7.97 0.412 -- -1.74 -- 2.53 0.0766 -- 0.9527 19 -- --
370.32 0.902 8.04 0.0272 2.46 -- -2.89 -- -0.0326 22.7 -- -- -- --
405.14 0.943 8.03 0.144 2.48 -- -- -- -0.0235 22.7 -- -- -- --
421.86 0.957 7.92 0.11 -- -1.8 -- -- 0.143 -- 2.79 26 -- --
377.96 0.905 7.99 -- 1.31 -1.12 -- -- 0.0451 21.5 2.511 34 -- --
784.81 1.31 7.97 0.193 -- -- -- -- -0.00932 -- -- -- -- --
405.69 0.942 8.04 -- 2.48 -- -- -- -0.0396 22.7 -- -- -- --
421.97 0.957 7.95 -- -- -1.83 -- -- 0.0926 -- 2.787 26 -- --
785.8 1.31 7.97 -- -- -- -- -- -0.0308 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 336.13 radiation 1 30 < th dose independent rect. 2 16
2 336.48 radiation 1 30 < th dose independent rect. 1 19
5 336.99 radiation 1 30 > th dose independent sin 2 NA
6 337.01 radiation 1 30 < th dose independent sin 2 NA
10 337.34 temperature 25 10 < th dose independent rect. 14 17
13 337.56 radiation 1 30 < th dose dependent rect. 2 16
23 338.15 radiation 1 90 < th dose dependent rect. 1 19
25 338.34 radiation 1 30 < th dose dependent sin 2 NA
27 338.43 radiation 1 10 < th dose dependent rect. 2 18
28 338.48 temperature 25 10 < th dose independent rect. 12 19
38 338.90 temperature 30 10 < th dose dependent rect. 15 15
42 339.00 radiation 1 30 < th dose independent rect. 23 23
64 339.91 temperature 30 10 < th dose dependent rect. 17 13
66 339.93 radiation 1 90 < th dose dependent rect. 23 21
72 340.40 radiation 1 90 < th dose independent rect. 23 21
87 341.20 radiation 1 30 < th dose independent rect. 1 23
92 341.39 radiation 10 720 < th dose dependent rect. 16 3
95 341.54 radiation 30 720 < th dose dependent rect. 15 4
97 341.63 temperature 30 10 < th dose dependent rect. 12 18
101 341.77 radiation 1 30 < th dose independent rect. 15 15
105 341.85 radiation 1 30 < th dose independent rect. 15 21
109 341.90 radiation 1 30 > th dose independent rect. 5 13
136 342.18 radiation 1 30 < th dose independent rect. 11 19
156 342.38 radiation 1 30 > th dose independent no NA NA
157 342.38 radiation 1 30 < th dose independent no NA NA
224 342.41 radiation 1 30 < th dose independent rect. 17 23
245 342.58 radiation 1 30 > th dose independent rect. 9 23
249 342.66 radiation 1 10 < th dose dependent rect. 23 23
250 342.68 radiation 10 720 < th dose dependent rect. 16 11
275 343.14 temperature 15 90 > th dose dependent rect. 20 5
350 343.25 radiation 1 10 > th dose independent rect. 17 23
352 343.28 temperature 15 270 > th dose dependent rect. 20 2
356 343.39 radiation 1 30 < th dose independent rect. 2 10
359 343.40 radiation 1 30 < th dose independent rect. 2 4
417 343.98 temperature 30 10 < th dose dependent rect. 14 6
442 344.26 temperature 25 10 < th dose independent rect. 14 6
457 344.50 radiation 1 30 < th dose dependent rect. 2 4
463 344.58 temperature 10 720 > th dose dependent rect. 11 5
464 344.59 radiation 1 30 < th dose dependent rect. 2 10
482 344.76 humidity 90 4320 > th dose dependent rect. 8 1
486 344.79 temperature 25 10 < th dose independent rect. 12 8
494 344.84 temperature 25 10 < th dose dependent rect. 12 8
496 344.85 radiation 1 30 < th dose dependent rect. 1 23
504 344.93 radiation 10 30 < th dose dependent rect. 14 17
509 344.98 radiation 1 720 < th dose independent rect. 16 3
512 345.00 humidity 90 4320 < th dose independent rect. 7 1
522 345.12 humidity 90 4320 > th dose independent rect. 7 2
532 345.19 radiation 10 30 < th dose dependent rect. 11 20
564 345.35 temperature 15 720 > th dose dependent rect. 13 2
575 345.43 radiation 1 30 < th dose independent rect. 21 23
591 345.50 atmosphere 1010 90 < th dose independent rect. 20 5
682 346.10 temperature 15 10 > th dose independent rect. 5 21
709 346.25 temperature 15 90 > th dose independent rect. 20 5
712 346.26 radiation 20 720 < th dose independent rect. 15 4
722 346.32 radiation 1 30 < th dose dependent rect. 15 21
746 346.45 temperature 15 90 > th dose independent rect. 5 20
833 346.77 radiation 1 30 < th dose independent rect. 19 23
839 346.81 radiation 1 30 < th dose dependent no NA NA
854 346.83 radiation 1 30 < th dose dependent rect. 17 23
855 346.84 wind 1 90 > th dose independent rect. 1 4
858 346.87 atmosphere 1015 90 < th dose dependent rect. 20 5
862 346.91 atmosphere 1000 90 > th dose independent rect. 1 4
888 347.04 temperature 30 90 < th dose independent rect. 5 10
953 347.35 radiation 20 720 < th dose independent rect. 15 13
982 347.55 atmosphere 1010 270 < th dose independent rect. 20 2
999 347.64 radiation 1 30 > th dose independent rect. 13 23