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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0802100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.83 (0.0163) R2 : 0.00201
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0329 (0.0344) R2dN8 : 0.00259 R2N8 : 0.00201
σ : 0.307
deviance : 43.33
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
41.1 0.301 2.85 -0.235 0.0178 0.493 -0.34 -4.38 0.0397 2.35 30.9 6 -- --
42.85 0.307 2.83 0.0159 0.0216 0.0643 -0.3 -- 0.0383 2.62 30.9 6 -- --
41.4 0.302 2.85 -0.2 0.0392 0.507 -- -4.37 0.0425 5.97 31.28 6 -- --
43.05 0.306 2.82 0.0198 0.0511 0.096 -- -- 0.0409 5.79 31.3 6 -- --
41.47 0.302 2.85 -0.201 -- 0.499 -- -4.42 0.0426 -- 31.25 6 -- --
42.94 0.307 2.83 0.0203 0.00645 -- -0.314 -- 0.0342 2.26 -- -- -- --
43.23 0.308 2.83 0.0287 0.0383 -- -- -- 0.0355 7.34 -- -- -- --
43.17 0.306 2.83 0.0237 -- 0.0786 -- -- 0.0413 -- 31.21 7 -- --
43.06 0.306 2.82 -- 0.0506 0.0965 -- -- 0.0389 6.2 31.29 6 -- --
43.31 0.308 2.83 0.0294 -- -- -- -- 0.0361 -- -- -- -- --
43.26 0.308 2.83 -- 0.0385 -- -- -- 0.0323 7.29 -- -- -- --
43.18 0.306 2.83 -- -- 0.0805 -- -- 0.0388 -- 31.21 6 -- --
43.33 0.307 2.83 -- -- -- -- -- 0.0329 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 38.92 temperature 25.0 30 > th dose independent rect. 4 1
4 38.99 temperature 25.0 90 > th dose dependent rect. 4 1
6 39.10 humidity 90.0 10 < th dose independent rect. 4 1
8 39.26 wind 1.0 30 > th dose dependent rect. 4 1
10 39.38 wind 1.0 30 > th dose independent rect. 4 1
12 39.79 atmosphere 1005.0 30 > th dose dependent rect. 4 1
13 39.84 temperature 30.0 30 < th dose independent rect. 5 23
16 40.11 temperature 25.0 10 > th dose independent rect. 20 10
18 40.17 wind 3.0 10 < th dose dependent rect. 4 1
19 40.18 atmosphere 1005.0 10 > th dose independent rect. 4 1
25 40.21 temperature 10.0 10 > th dose dependent rect. 4 1
31 40.23 wind 3.0 10 < th dose independent rect. 4 1
47 40.25 temperature 10.0 10 > th dose independent rect. 4 1
52 40.25 temperature 30.0 10 < th dose independent rect. 4 1
54 40.25 humidity 50.0 10 > th dose independent rect. 4 1
61 40.25 atmosphere 995.0 10 > th dose independent rect. 4 1
64 40.25 atmosphere 1010.0 10 < th dose independent rect. 4 1
68 40.25 radiation 1.0 10 < th dose independent rect. 4 1
78 40.25 precipitation 0.1 10 < th dose independent rect. 4 1
80 40.25 temperature 10.0 10 > th dose independent rect. 5 23
82 40.25 radiation 20.0 10 < th dose dependent rect. 4 1
85 40.25 radiation 1.0 30 < th dose dependent rect. 4 1
90 40.25 precipitation 0.1 10 < th dose dependent rect. 4 1
94 40.26 humidity 50.0 10 > th dose dependent rect. 4 1
99 40.28 wind 7.0 1440 < th dose independent rect. 5 1
101 40.28 temperature 10.0 1440 > th dose independent rect. 5 1
104 40.28 temperature 30.0 1440 < th dose independent rect. 5 1
108 40.28 humidity 50.0 1440 > th dose independent rect. 5 1
117 40.28 atmosphere 995.0 1440 > th dose independent rect. 5 1
118 40.28 atmosphere 1015.0 1440 < th dose independent rect. 5 1
119 40.28 radiation 20.0 1440 < th dose independent rect. 5 1
129 40.28 temperature 10.0 1440 > th dose independent rect. 6 23
140 40.30 temperature 30.0 30 < th dose dependent rect. 4 1
141 40.30 atmosphere 1015.0 30 < th dose dependent rect. 4 1
151 40.43 atmosphere 995.0 10 > th dose independent rect. 5 23
164 40.60 wind 9.0 30 < th dose independent rect. 5 23
166 40.63 precipitation 0.1 30 < th dose independent rect. 5 23
167 40.63 precipitation 0.1 30 < th dose dependent rect. 5 23
179 40.78 temperature 20.0 30 > th dose dependent rect. 20 9
194 40.86 temperature 30.0 90 > th dose independent rect. 11 1
197 40.89 temperature 30.0 10 > th dose independent rect. 11 1
203 40.91 temperature 30.0 10 > th dose dependent rect. 11 1
237 41.01 temperature 25.0 720 > th dose independent rect. 18 3
295 41.08 temperature 25.0 10 > th dose independent rect. 22 8
297 41.08 humidity 90.0 10 < th dose dependent rect. 4 1
315 41.10 wind 1.0 270 < th dose independent rect. 1 2
331 41.11 temperature 10.0 90 > th dose dependent rect. 19 10
365 41.19 temperature 25.0 30 > th dose independent rect. 20 3
383 41.23 temperature 30.0 30 < th dose independent rect. 23 23
391 41.25 temperature 30.0 10 > th dose dependent sin 7 NA
397 41.26 temperature 25.0 90 > th dose dependent rect. 20 3
400 41.27 temperature 30.0 720 > th dose independent rect. 11 1
434 41.36 temperature 25.0 720 > th dose independent rect. 17 12
436 41.37 temperature 30.0 30 > th dose independent sin 7 NA
473 41.41 temperature 25.0 720 > th dose independent rect. 17 9
534 41.49 temperature 20.0 720 > th dose dependent rect. 17 4
570 41.51 temperature 30.0 30 < th dose independent rect. 21 23
635 41.57 temperature 25.0 720 > th dose dependent rect. 17 6
656 41.58 temperature 10.0 720 > th dose dependent rect. 17 4
672 41.60 radiation 40.0 10 < th dose dependent rect. 12 1
690 41.62 radiation 10.0 720 < th dose independent rect. 17 4
766 41.65 temperature 20.0 30 > th dose dependent rect. 22 7
794 41.66 temperature 25.0 720 < th dose independent rect. 17 8
797 41.66 humidity 50.0 30 > th dose independent rect. 5 23
798 41.66 temperature 25.0 720 > th dose dependent rect. 20 1
806 41.67 temperature 30.0 30 < th dose independent sin 7 NA
825 41.69 radiation 30.0 10 < th dose independent rect. 12 1
844 41.70 atmosphere 1005.0 30 > th dose dependent rect. 20 3
846 41.71 wind 1.0 30 > th dose independent rect. 20 1
847 41.71 wind 9.0 30 < th dose independent rect. 20 1
848 41.71 temperature 10.0 30 > th dose independent rect. 20 1
851 41.71 temperature 30.0 30 < th dose independent rect. 20 1
852 41.71 humidity 50.0 30 > th dose independent rect. 20 1
855 41.71 atmosphere 995.0 30 > th dose independent rect. 20 1
858 41.71 atmosphere 1010.0 30 < th dose independent rect. 20 1
860 41.71 radiation 1.0 30 < th dose independent rect. 20 1
865 41.71 precipitation 0.1 30 < th dose independent rect. 20 1
869 41.71 radiation 10.0 720 < th dose independent rect. 17 12
871 41.71 temperature 10.0 30 > th dose independent rect. 21 23
872 41.71 temperature 10.0 30 > th dose dependent rect. 20 1
874 41.71 atmosphere 995.0 30 > th dose dependent rect. 20 1
876 41.71 radiation 1.0 30 < th dose dependent rect. 20 1
881 41.71 radiation 20.0 4320 < th dose dependent rect. 21 1
883 41.71 precipitation 0.1 30 < th dose dependent rect. 20 1
894 41.72 wind 5.0 30 < th dose independent rect. 20 1
896 41.72 humidity 90.0 30 < th dose independent rect. 20 1
899 41.72 wind 7.0 30 < th dose dependent rect. 20 1
902 41.72 humidity 50.0 30 > th dose dependent rect. 20 1
922 41.73 temperature 10.0 1440 > th dose independent rect. 21 1
925 41.73 temperature 30.0 1440 < th dose independent rect. 21 1
930 41.73 humidity 50.0 1440 > th dose independent rect. 21 1
936 41.73 atmosphere 995.0 1440 > th dose independent rect. 21 1
937 41.73 radiation 1.0 1440 < th dose independent rect. 21 1
960 41.73 temperature 10.0 1440 > th dose independent rect. 22 23
964 41.73 wind 1.0 30 > th dose dependent rect. 20 1
966 41.73 atmosphere 1015.0 30 < th dose dependent rect. 20 1
979 41.74 humidity 90.0 30 < th dose dependent rect. 20 1
990 41.75 temperature 25.0 10 < th dose independent sin 11 NA
991 41.75 wind 7.0 1440 > th dose independent rect. 4 1
1000 41.75 wind 9.0 720 < th dose independent rect. 17 4