Os03g0801500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0801500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.61 | 0.256 | 8.78 | -0.314 | 0.669 | -0.503 | -0.868 | 0.997 | -0.0296 | 21.8 | 1.916 | 1271 | -- | -- |
| 31.19 | 0.26 | 8.8 | -0.417 | 0.674 | -0.459 | -0.677 | -- | -0.0743 | 21.8 | 0.01737 | 1270 | -- | -- |
| 32.27 | 0.265 | 8.78 | -0.288 | 0.667 | -0.507 | -- | 0.857 | -0.00561 | 21.8 | 2.139 | 1312 | -- | -- |
| 32.86 | 0.267 | 8.8 | -0.407 | 0.677 | -0.482 | -- | -- | -0.0767 | 21.9 | -0.02552 | 1270 | -- | -- |
| 44.51 | 0.312 | 8.8 | -0.492 | -- | -0.596 | -- | 1.04 | -0.186 | -- | 2.139 | 1312 | -- | -- |
| 37.85 | 0.288 | 8.82 | -0.487 | 0.556 | -- | -0.755 | -- | -0.173 | 21.5 | -- | -- | -- | -- |
| 39.95 | 0.296 | 8.82 | -0.459 | 0.558 | -- | -- | -- | -0.172 | 21.6 | -- | -- | -- | -- |
| 46.24 | 0.318 | 8.8 | -0.456 | -- | -0.615 | -- | -- | -0.181 | -- | -0.02552 | 1270 | -- | -- |
| 36.94 | 0.283 | 8.8 | -- | 0.685 | -0.522 | -- | -- | -0.0383 | 21.9 | 2.26 | 1270 | -- | -- |
| 58.39 | 0.357 | 8.8 | -0.455 | -- | -- | -- | -- | -0.173 | -- | -- | -- | -- | -- |
| 45.5 | 0.316 | 8.8 | -- | 0.557 | -- | -- | -- | -0.121 | 21.6 | -- | -- | -- | -- |
| 51.73 | 0.336 | 8.79 | -- | -- | -0.614 | -- | -- | -0.13 | -- | -0.02552 | 1270 | -- | -- |
| 63.84 | 0.373 | 8.79 | -- | -- | -- | -- | -- | -0.123 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.69 | radiation | 1 | 1440 | > th | dose dependent | rect. | 8 | 5 |
| 2 | 29.71 | radiation | 10 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 5 | 29.74 | radiation | 1 | 1440 | > th | dose dependent | rect. | 5 | 9 |
| 21 | 29.77 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 34 | 29.80 | radiation | 40 | 1440 | < th | dose dependent | rect. | 8 | 4 |
| 43 | 29.90 | radiation | 30 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 73 | 29.94 | radiation | 30 | 1440 | < th | dose independent | rect. | 24 | 13 |
| 90 | 29.95 | radiation | 30 | 1440 | < th | dose independent | rect. | 6 | 7 |
| 113 | 29.96 | radiation | 1 | 1440 | > th | dose dependent | sin | 5 | NA |
| 245 | 30.13 | radiation | 20 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 255 | 30.13 | radiation | 40 | 1440 | < th | dose dependent | sin | 5 | NA |
| 278 | 30.19 | radiation | 30 | 1440 | < th | dose independent | sin | 6 | NA |
| 359 | 30.29 | radiation | 40 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 360 | 30.30 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 364 | 30.30 | radiation | 40 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 385 | 30.35 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 6 |
| 420 | 30.37 | radiation | 40 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 426 | 30.39 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 21 |
| 544 | 30.47 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 587 | 30.49 | radiation | 10 | 1440 | < th | dose dependent | rect. | 5 | 11 |
| 599 | 30.49 | radiation | 1 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 604 | 30.51 | wind | 9 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 616 | 30.51 | radiation | 10 | 1440 | < th | dose dependent | rect. | 24 | 16 |
| 672 | 30.53 | radiation | 1 | 1440 | > th | dose dependent | no | NA | NA |
| 763 | 30.56 | radiation | 40 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 801 | 30.58 | radiation | 40 | 1440 | > th | dose dependent | sin | 23 | NA |
| 804 | 30.58 | radiation | 40 | 1440 | > th | dose dependent | no | NA | NA |