Os03g0800000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nitrate and chloride transporter.
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Os03g0800000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nitrate and chloride transporter.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 98.39 | 0.466 | 12.1 | 1.87 | 1.06 | 0.566 | -0.306 | 0.582 | -0.319 | 6.35 | 22.82 | 11662 | -- | -- |
| 99.26 | 0.464 | 12.1 | 1.8 | 1.06 | 0.558 | -0.206 | -- | -0.311 | 6.22 | 23.27 | 11595 | -- | -- |
| 98.56 | 0.462 | 12.1 | 1.86 | 1.07 | 0.562 | -- | 0.555 | -0.324 | 6.43 | 23.01 | 11800 | -- | -- |
| 98.37 | 0.462 | 12.1 | 1.75 | 1.05 | 0.537 | -- | -- | -0.349 | 6.43 | 28.62 | 11550 | -- | -- |
| 156.18 | 0.582 | 12.1 | 1.96 | -- | 0.6 | -- | 0.822 | -0.281 | -- | 22.84 | 11427 | -- | -- |
| 109.82 | 0.491 | 12 | 1.99 | 1.08 | -- | -0.304 | -- | -0.137 | 6.29 | -- | -- | -- | -- |
| 110.03 | 0.491 | 12 | 1.99 | 1.07 | -- | -- | -- | -0.135 | 6.36 | -- | -- | -- | -- |
| 154.97 | 0.58 | 12.1 | 1.75 | -- | 0.586 | -- | -- | -0.38 | -- | 30.1 | 12879 | -- | -- |
| 110.93 | 0.491 | 12.2 | -- | 1.08 | 1.64 | -- | -- | -0.854 | 6.45 | 12.95 | 47520 | -- | -- |
| 169.89 | 0.609 | 12.1 | 2.02 | -- | -- | -- | -- | -0.112 | -- | -- | -- | -- | -- |
| 214.35 | 0.685 | 12.1 | -- | 1.1 | -- | -- | -- | -0.357 | 6.26 | -- | -- | -- | -- |
| 170.27 | 0.608 | 12.2 | -- | -- | 1.66 | -- | -- | -0.834 | -- | 7.859 | 47520 | -- | -- |
| 277.27 | 0.777 | 12.1 | -- | -- | -- | -- | -- | -0.336 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 89.61 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 1 | 9 |
| 8 | 91.10 | temperature | 20.0 | 720 | < th | dose independent | rect. | 3 | 4 |
| 12 | 91.31 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 37 | 92.00 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 5 | 1 |
| 50 | 92.19 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 15 |
| 57 | 92.35 | temperature | 30.0 | 10 | < th | dose independent | rect. | 9 | 7 |
| 74 | 92.62 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 7 |
| 96 | 93.01 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 5 |
| 107 | 93.28 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 7 | 1 |
| 112 | 93.35 | temperature | 25.0 | 270 | < th | dose independent | rect. | 6 | 7 |
| 134 | 93.76 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 8 |
| 153 | 93.99 | temperature | 20.0 | 270 | > th | dose independent | rect. | 2 | 8 |
| 163 | 94.08 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 4 | 16 |
| 176 | 94.30 | temperature | 30.0 | 720 | < th | dose dependent | sin | 8 | NA |
| 216 | 94.76 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 7 | 9 |
| 263 | 95.13 | temperature | 25.0 | 270 | < th | dose independent | rect. | 9 | 1 |
| 264 | 95.13 | temperature | 30.0 | 10 | < th | dose independent | rect. | 7 | 9 |
| 274 | 95.16 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 284 | 95.25 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 20 | 8 |
| 295 | 95.36 | temperature | 10.0 | 720 | > th | dose dependent | sin | 8 | NA |
| 298 | 95.37 | temperature | 30.0 | 10 | < th | dose independent | rect. | 11 | 5 |
| 326 | 95.49 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 345 | 95.60 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 15 |
| 346 | 95.60 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 354 | 95.63 | temperature | 20.0 | 720 | > th | dose independent | rect. | 2 | 4 |
| 362 | 95.66 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 427 | 96.04 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 4 | 16 |
| 432 | 96.04 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 4 | 16 |
| 437 | 96.08 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 448 | 96.13 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 451 | 96.14 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 452 | 96.14 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 9 |
| 453 | 96.14 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 15 |
| 466 | 96.20 | temperature | 20.0 | 720 | < th | dose independent | sin | 6 | NA |
| 473 | 96.21 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 494 | 96.31 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 9 |
| 496 | 96.31 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 9 |
| 506 | 96.35 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 9 |
| 507 | 96.35 | wind | 7.0 | 90 | < th | dose independent | rect. | 13 | 14 |
| 539 | 96.47 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 18 |
| 540 | 96.48 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 20 | 8 |
| 542 | 96.49 | temperature | 15.0 | 30 | > th | dose independent | rect. | 20 | 8 |
| 588 | 96.67 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 18 | 8 |
| 609 | 96.73 | wind | 1.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 660 | 96.90 | temperature | 30.0 | 10 | < th | dose independent | rect. | 24 | 16 |
| 669 | 96.94 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 673 | 96.95 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 685 | 96.99 | radiation | 20.0 | 90 | < th | dose independent | rect. | 16 | 17 |
| 697 | 97.06 | wind | 9.0 | 30 | < th | dose independent | rect. | 4 | 16 |
| 701 | 97.07 | humidity | 50.0 | 30 | > th | dose independent | rect. | 16 | 17 |
| 710 | 97.11 | wind | 9.0 | 30 | < th | dose independent | rect. | 20 | 8 |
| 724 | 97.15 | temperature | 30.0 | 30 | < th | dose independent | rect. | 20 | 8 |
| 725 | 97.15 | humidity | 50.0 | 30 | > th | dose independent | rect. | 20 | 8 |
| 729 | 97.15 | radiation | 1.0 | 30 | < th | dose independent | rect. | 20 | 8 |
| 736 | 97.15 | temperature | 10.0 | 30 | > th | dose independent | rect. | 4 | 16 |
| 739 | 97.15 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 4 | 16 |
| 740 | 97.15 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 20 | 8 |
| 759 | 97.19 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 20 | 8 |
| 765 | 97.22 | wind | 9.0 | 90 | < th | dose dependent | rect. | 13 | 14 |
| 767 | 97.23 | temperature | 30.0 | 10 | < th | dose independent | rect. | 20 | 20 |
| 768 | 97.24 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 16 | 17 |
| 772 | 97.24 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 16 | 17 |
| 779 | 97.25 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 781 | 97.26 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 16 | 17 |
| 791 | 97.29 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 819 | 97.37 | wind | 9.0 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 831 | 97.40 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 21 | 9 |
| 838 | 97.42 | wind | 7.0 | 270 | < th | dose independent | rect. | 11 | 14 |
| 843 | 97.43 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 20 | 8 |
| 889 | 97.50 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 916 | 97.56 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 921 | 97.57 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 923 | 97.57 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 23 | 7 |
| 939 | 97.58 | humidity | 70.0 | 720 | > th | dose independent | rect. | 16 | 9 |
| 943 | 97.58 | radiation | 40.0 | 10 | < th | dose independent | rect. | 16 | 17 |
| 950 | 97.59 | wind | 7.0 | 270 | < th | dose independent | rect. | 1 | 10 |
| 967 | 97.61 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 973 | 97.64 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 995 | 97.65 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 11 | 4 |
| 996 | 97.65 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 11 | 4 |