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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0798500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : WRKY transcription factor 6.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.55 (0.0386) R2 : 0.794
β1 : 1.87 (0.14) R2dD : 0.0853 R2D : 0.0762
β2 : 2.11 (0.112) R2dC : 0.221 R2C : 0.431
β3 : 2.42 (0.137) R2dE : 0.206 R2E : 0.446
β4 : 2.93 (0.407) R2dD*C : 0.023 R2D*C : 0.0199
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.454 (0.0847) R2dN8 : 0.0196 R2N8 : 0.0292
σ : 0.708
deviance : 231.33
__
_____
C
peak time of C : 8.19
E
wheather : temperature
threshold : 23.63
memory length : 233
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.09
open length of G : 5.23

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
231.33 0.715 4.55 1.78 2.12 2.4 2.96 -0.769 0.444 8.2 23.7 233 2 5.27
231.33 0.708 4.55 1.87 2.11 2.42 2.93 -- 0.454 8.19 23.63 233 2.09 5.23
256.69 0.746 4.56 2.02 2.08 2.47 -- 0.765 0.429 8.19 23.68 238 2.02 5.22
256.82 0.746 4.55 1.96 2.13 2.42 -- -- 0.464 8.14 23.61 233 2.08 5.17
324.39 0.839 4.52 2.26 -- 3.27 -- 3.08 0.834 -- 8.83 447 1.11 5.28
362.46 0.893 4.42 2.08 3.27 -- 3.02 -- 0.897 7.43 -- -- -- --
387.29 0.922 4.42 2.15 3.27 -- -- -- 0.89 7.38 -- -- -- --
341.32 0.86 4.54 2.09 -- 3.3 -- -- 0.754 -- 14.73 478 0.149 6.5
357.77 0.881 4.59 -- 2.12 2.52 -- -- 0.323 8.05 23.5 222 2.18 5.02
957.88 1.45 4.5 2.2 -- -- -- -- 0.944 -- -- -- -- --
508.75 1.06 4.47 -- 3.29 -- -- -- 0.651 7.33 -- -- -- --
440.14 0.977 4.63 -- -- 3.41 -- -- 0.385 -- 18.5 431 1.6 4.93
1085.62 1.54 4.55 -- -- -- -- -- 0.7 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 256.59 temperature 20.0 270 > th dose dependent rect. 2 5
2 259.84 temperature 20.0 270 > th dose dependent rect. 3 3
21 273.62 wind 5.0 10 < th dose dependent rect. 4 5
23 274.55 temperature 20.0 10 > th dose dependent rect. 4 5
26 275.22 temperature 20.0 270 > th dose independent rect. 2 5
31 276.58 temperature 20.0 270 > th dose independent rect. 3 3
42 278.31 wind 3.0 10 < th dose independent rect. 4 5
86 284.26 temperature 20.0 30 > th dose independent rect. 4 5
87 284.29 wind 5.0 270 < th dose independent rect. 2 5
117 286.60 radiation 10.0 270 < th dose independent rect. 2 5
126 287.44 precipitation 0.1 270 < th dose independent rect. 2 5
127 287.44 precipitation 0.1 270 < th dose dependent rect. 2 5
156 289.29 radiation 20.0 10 < th dose independent rect. 4 5
177 290.42 wind 9.0 30 < th dose dependent rect. 4 18
181 290.58 wind 3.0 30 < th dose dependent rect. 4 18
188 290.92 humidity 50.0 270 > th dose dependent rect. 2 5
190 290.97 humidity 70.0 270 > th dose independent rect. 2 5
208 291.37 precipitation 0.1 270 < th dose independent rect. 7 19
210 291.37 precipitation 0.1 270 < th dose dependent rect. 7 19
217 291.51 temperature 10.0 270 > th dose independent rect. 2 5
219 291.51 temperature 30.0 270 < th dose independent rect. 2 5
220 291.51 humidity 50.0 270 > th dose independent rect. 2 5
222 291.51 atmosphere 995.0 270 > th dose independent rect. 2 5
223 291.51 atmosphere 1015.0 270 < th dose independent rect. 2 5
225 291.51 temperature 10.0 270 > th dose independent rect. 7 19
227 291.52 precipitation 0.1 10 < th dose independent rect. 4 5
228 291.52 precipitation 0.1 10 < th dose dependent rect. 4 5
229 291.54 precipitation 0.1 270 < th dose independent rect. 3 2
230 291.54 precipitation 0.1 270 < th dose dependent rect. 3 2
234 291.63 wind 9.0 270 < th dose independent rect. 7 19
237 291.75 atmosphere 1005.0 10 > th dose independent rect. 4 5
239 291.87 radiation 40.0 270 < th dose dependent rect. 2 5
245 292.05 temperature 25.0 720 > th dose dependent rect. 19 3
246 292.09 humidity 70.0 10 > th dose independent rect. 4 5
260 292.65 temperature 10.0 10 > th dose independent rect. 4 5
262 292.65 temperature 30.0 10 < th dose independent rect. 4 5
263 292.65 humidity 50.0 10 > th dose independent rect. 4 5
265 292.65 atmosphere 995.0 10 > th dose independent rect. 4 5
266 292.65 atmosphere 1015.0 10 < th dose independent rect. 4 5
267 292.65 temperature 10.0 10 > th dose independent rect. 9 19
268 292.66 wind 9.0 10 < th dose independent rect. 9 19
273 292.72 temperature 10.0 10 > th dose dependent rect. 4 18
283 293.12 atmosphere 1005.0 90 > th dose independent rect. 4 3
290 293.33 wind 1.0 270 > th dose independent rect. 7 19
305 293.83 temperature 20.0 270 > th dose independent rect. 2 18
307 293.88 atmosphere 1005.0 270 > th dose independent rect. 2 5
310 293.95 temperature 15.0 10 > th dose independent rect. 22 6
325 294.18 temperature 20.0 30 > th dose independent rect. 4 18
326 294.21 precipitation 0.1 10 < th dose independent rect. 4 18
327 294.21 precipitation 0.1 10 < th dose dependent rect. 4 18
328 294.23 wind 9.0 10 < th dose independent rect. 22 6
330 294.23 temperature 30.0 10 < th dose independent rect. 22 6
331 294.23 humidity 50.0 10 > th dose independent rect. 22 6
334 294.23 atmosphere 995.0 10 > th dose independent rect. 22 6
335 294.23 radiation 1.0 10 < th dose independent rect. 22 6
340 294.23 temperature 10.0 10 > th dose independent rect. 4 18
342 294.23 atmosphere 1015.0 10 < th dose independent rect. 4 18
343 294.23 radiation 1.0 10 < th dose dependent rect. 22 6
352 294.40 temperature 20.0 720 > th dose dependent rect. 19 12
365 294.73 atmosphere 995.0 10 > th dose dependent rect. 4 5
373 294.86 humidity 60.0 270 > th dose dependent rect. 3 2
374 294.88 atmosphere 995.0 10 > th dose independent rect. 9 19
376 294.90 radiation 1.0 90 > th dose independent rect. 18 13
407 295.11 wind 9.0 10 < th dose independent rect. 4 18
411 295.16 atmosphere 995.0 270 > th dose independent rect. 7 19
413 295.31 wind 3.0 30 < th dose dependent rect. 4 12
433 295.73 radiation 1.0 90 > th dose independent rect. 4 3
464 296.06 atmosphere 1010.0 270 < th dose independent rect. 3 3
468 296.12 wind 3.0 30 < th dose dependent rect. 4 10
472 296.22 precipitation 0.1 10 < th dose independent rect. 9 19
473 296.22 precipitation 0.1 10 < th dose dependent rect. 9 19
499 296.33 radiation 1.0 10 > th dose dependent rect. 18 13
503 296.39 humidity 90.0 270 > th dose independent rect. 3 2
507 296.44 atmosphere 995.0 270 > th dose dependent rect. 2 5
511 296.49 temperature 10.0 270 > th dose independent rect. 3 3
513 296.49 temperature 30.0 270 < th dose independent rect. 3 3
514 296.49 humidity 50.0 270 > th dose independent rect. 3 3
517 296.49 atmosphere 995.0 270 > th dose independent rect. 3 3
522 296.49 temperature 10.0 270 > th dose independent rect. 6 21
524 296.50 humidity 50.0 30 > th dose dependent rect. 4 5
547 296.70 radiation 1.0 10 > th dose dependent rect. 5 2
549 296.70 radiation 40.0 270 < th dose dependent rect. 3 3
568 296.88 humidity 80.0 30 > th dose independent rect. 4 3
595 297.04 radiation 40.0 10 < th dose dependent rect. 4 5
632 297.43 humidity 80.0 720 < th dose dependent rect. 19 1
654 297.54 precipitation 0.1 270 < th dose independent rect. 2 19
655 297.54 precipitation 0.1 270 < th dose dependent rect. 2 19
658 297.56 humidity 70.0 720 > th dose independent rect. 17 9
661 297.57 temperature 10.0 720 > th dose dependent rect. 18 13
684 297.90 temperature 10.0 720 > th dose dependent rect. 19 11
688 297.92 atmosphere 1015.0 10 < th dose independent rect. 22 6
689 297.93 wind 9.0 270 < th dose dependent rect. 2 18
698 298.03 wind 9.0 30 < th dose independent rect. 7 21
718 298.22 atmosphere 995.0 30 > th dose dependent rect. 4 3
736 298.30 precipitation 0.1 30 < th dose independent rect. 22 6
737 298.30 precipitation 0.1 30 < th dose dependent rect. 22 6
740 298.33 precipitation 0.1 270 < th dose independent rect. 1 21
741 298.33 precipitation 0.1 270 < th dose dependent rect. 1 21
744 298.37 wind 9.0 270 < th dose dependent rect. 1 20
774 298.62 temperature 30.0 720 < th dose independent rect. 18 1
808 298.99 radiation 10.0 10 < th dose independent rect. 4 18
815 299.05 humidity 50.0 270 > th dose independent rect. 7 19
833 299.34 humidity 70.0 720 < th dose independent rect. 18 2
844 299.34 atmosphere 1015.0 10 < th dose independent rect. 9 19
867 299.56 wind 1.0 90 > th dose independent rect. 7 22
885 299.80 wind 9.0 270 < th dose dependent rect. 15 16
907 299.93 atmosphere 995.0 30 > th dose independent rect. 7 21
928 300.01 humidity 50.0 10 > th dose dependent rect. 22 6
931 300.03 wind 9.0 10 < th dose dependent rect. 22 6
983 300.53 precipitation 0.1 270 < th dose independent rect. 21 5
985 300.53 precipitation 0.1 270 < th dose dependent rect. 21 5
987 300.56 precipitation 0.1 30 < th dose independent rect. 7 21
988 300.56 precipitation 0.1 30 < th dose dependent rect. 7 21