Os03g0798200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os03g0798200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.19 | 0.254 | 8.79 | 0.571 | 0.464 | 0.683 | 0.241 | -0.332 | 0.0523 | 1.93 | 21.78 | 1959 | -- | -- |
| 29.45 | 0.253 | 8.78 | 0.655 | 0.477 | 0.707 | 0.293 | -- | 0.0719 | 1.96 | 21.6 | 1963 | -- | -- |
| 29.4 | 0.253 | 8.79 | 0.568 | 0.463 | 0.68 | -- | -0.325 | 0.0524 | 1.83 | 21.75 | 1960 | -- | -- |
| 29.64 | 0.254 | 8.78 | 0.656 | 0.464 | 0.705 | -- | -- | 0.0758 | 1.84 | 21.63 | 1963 | -- | -- |
| 40.79 | 0.297 | 8.79 | 0.539 | -- | 0.761 | -- | -0.265 | 0.034 | -- | 21.8 | 2415 | -- | -- |
| 44.72 | 0.314 | 8.73 | 0.983 | 0.482 | -- | 0.161 | -- | 0.295 | 1.63 | -- | -- | -- | -- |
| 44.82 | 0.314 | 8.73 | 0.978 | 0.482 | -- | -- | -- | 0.294 | 1.57 | -- | -- | -- | -- |
| 40.92 | 0.298 | 8.78 | 0.609 | -- | 0.781 | -- | -- | 0.0542 | -- | 21.65 | 2449 | -- | -- |
| 33.19 | 0.268 | 8.8 | -- | 0.463 | 1.25 | -- | -- | -0.0238 | 1.6 | 18.93 | 7740 | -- | -- |
| 59.01 | 0.359 | 8.73 | 0.997 | -- | -- | -- | -- | 0.304 | -- | -- | -- | -- | -- |
| 70.02 | 0.391 | 8.76 | -- | 0.499 | -- | -- | -- | 0.185 | 1.63 | -- | -- | -- | -- |
| 46.18 | 0.317 | 8.8 | -- | -- | 1.27 | -- | -- | -0.0253 | -- | 19.06 | 7984 | -- | -- |
| 85.23 | 0.431 | 8.75 | -- | -- | -- | -- | -- | 0.194 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.09 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 28 | 29.68 | temperature | 25.0 | 720 | < th | dose dependent | sin | 12 | NA |
| 36 | 29.78 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 9 | 22 |
| 44 | 29.85 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 52 | 29.88 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 54 | 29.90 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 74 | 30.02 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 23 | 23 |
| 91 | 30.14 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 99 | 30.20 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 118 | 30.36 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 124 | 30.39 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 218 | 30.84 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 1 | 11 |
| 228 | 30.87 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 247 | 30.91 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 7 | NA |
| 516 | 31.21 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 593 | 31.31 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 613 | 31.36 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 614 | 31.36 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 670 | 31.46 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 672 | 31.46 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 695 | 31.52 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 798 | 31.71 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 799 | 31.72 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 834 | 31.79 | wind | 9.0 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 843 | 31.80 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 852 | 31.80 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 873 | 31.85 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 875 | 31.85 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 889 | 31.87 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 963 | 32.00 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 975 | 32.02 | wind | 7.0 | 43200 | > th | dose independent | rect. | 10 | 2 |