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Os03g0797300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.21 (0.0804) R2 : 0.738
β1 : -4.97 (0.399) R2dD : 0.183 R2D : 0.0329
β2 : 5.45 (0.203) R2dC : 0.417 R2C : 0.378
β3 : -5.61 (0.339) R2dE : 0.187 R2E : 0.18
β4 : 4.1 (0.929) R2dD*C : 0.0112 R2D*C : 0.0117
β5 : 7.47 (1.4) R2dD*E : 0.0351 R2D*E : -0.0196
γ1 : 0.493 (0.178) R2dN8 : 0.00677 R2N8 : 0.0368
σ : 1.46
deviance : 971.31
__
_____
C
peak time of C : 5.49
E
wheather : radiation
threshold : 1.154
memory length : 4224
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 6.55
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
971.31 1.46 9.21 -4.97 5.45 -5.61 4.1 7.47 0.493 5.49 1.154 4224 6.55 --
1017.28 1.49 9.13 -3.69 5.24 -5.85 4.13 -- 0.721 5.22 0.7134 4260 6.36 --
1010.08 1.48 9.23 -4.99 5.4 -5.5 -- 7.63 0.441 5.38 1.339 4233 6.41 --
1041.52 1.5 9.14 -3.67 5.13 -5.26 -- -- 0.745 4.56 0.6031 4298 6.63 --
2388.4 2.28 9.2 -3.23 -- -5.45 -- 3.17 0.82 -- 1.817 4266 5.08 --
1643.1 1.9 8.96 -2.62 5.4 -- 2.61 -- 1.59 4.37 -- -- -- --
1660.71 1.91 8.97 -2.64 5.4 -- -- -- 1.58 4.28 -- -- -- --
2201.99 2.19 9.35 -3.71 -- -7.61 -- -- 0.566 -- 1.603 4199 0.17 --
1338.96 1.7 9.1 -- 5.22 -4.45 -- -- 0.99 4.37 2.83 4324 8.74 --
3234.78 2.66 9 -2.43 -- -- -- -- 1.72 -- -- -- -- --
1844.57 2.01 8.9 -- 5.35 -- -- -- 1.87 4.29 -- -- -- --
2592.84 2.38 8.94 -- -- 3.98 -- -- 2.01 -- 1.603 4199 0.17 --
3390.02 2.72 8.94 -- -- -- -- -- 1.99 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 927.76 humidity 70 43200 < th dose dependent rect. 18 1
2 928.00 wind 7 43200 > th dose dependent rect. 18 2
4 932.23 wind 7 43200 < th dose independent rect. 15 13
5 932.73 wind 7 43200 > th dose independent rect. 15 13
6 932.88 wind 7 43200 < th dose independent rect. 15 11
9 934.01 wind 7 43200 > th dose independent rect. 18 2
10 934.24 humidity 70 43200 < th dose dependent rect. 17 3
11 934.34 wind 7 43200 > th dose independent rect. 15 15
16 935.04 radiation 10 14400 < th dose dependent rect. 19 10
19 935.28 wind 5 43200 > th dose dependent rect. 15 11
23 936.18 wind 9 43200 < th dose independent rect. 18 2
26 936.67 wind 9 43200 > th dose dependent rect. 21 2
31 937.37 humidity 60 43200 > th dose independent rect. 17 4
35 937.83 humidity 60 43200 < th dose independent rect. 17 3
36 938.02 wind 5 43200 > th dose dependent rect. 14 14
41 938.41 humidity 60 43200 < th dose independent rect. 16 8
48 939.05 wind 7 43200 < th dose independent sin 14 NA
50 939.07 wind 7 43200 > th dose independent sin 14 NA
62 940.15 humidity 60 43200 > th dose independent rect. 16 8
76 941.60 wind 5 43200 > th dose dependent sin 15 NA
113 945.40 humidity 60 43200 < th dose independent rect. 18 1
121 946.52 wind 9 43200 < th dose independent rect. 18 5
131 947.02 wind 7 43200 < th dose independent rect. 15 6
136 947.19 humidity 60 43200 > th dose independent rect. 18 1
150 948.01 wind 5 43200 > th dose dependent rect. 15 6
161 948.70 humidity 60 43200 < th dose independent rect. 14 22
163 948.88 radiation 10 14400 < th dose dependent rect. 22 7
191 950.28 humidity 60 43200 > th dose independent rect. 14 21
222 951.78 humidity 60 43200 < th dose independent sin 15 NA
238 952.21 humidity 60 43200 < th dose independent rect. 15 15
242 952.40 humidity 70 43200 < th dose dependent rect. 9 12
255 952.90 humidity 60 43200 < th dose independent rect. 14 17
276 953.34 wind 7 43200 < th dose independent rect. 15 1
325 954.26 wind 7 43200 > th dose dependent rect. 18 5
326 954.28 humidity 70 43200 < th dose dependent sin 20 NA
363 954.92 humidity 60 43200 > th dose independent rect. 15 15
384 955.26 humidity 60 43200 > th dose independent sin 14 NA
398 955.67 humidity 60 43200 < th dose independent no NA NA
404 955.74 humidity 60 43200 < th dose independent rect. 3 23
406 955.78 humidity 60 43200 < th dose independent rect. 8 23
481 957.00 radiation 10 14400 < th dose independent rect. 19 10
646 959.46 wind 7 43200 > th dose independent rect. 15 1
661 959.85 humidity 60 43200 < th dose dependent rect. 11 1
667 959.97 humidity 60 43200 > th dose independent no NA NA
681 960.17 humidity 60 43200 > th dose independent rect. 3 23
696 960.31 humidity 60 43200 > th dose independent rect. 8 23
715 960.53 humidity 60 43200 > th dose independent rect. 1 23
768 961.32 humidity 50 43200 > th dose independent rect. 11 1
769 961.33 humidity 50 43200 > th dose independent rect. 10 3
851 962.57 wind 5 43200 > th dose dependent rect. 15 1
859 962.63 humidity 50 43200 < th dose independent rect. 10 3
884 962.99 humidity 60 43200 < th dose independent sin 4 NA
909 963.23 humidity 50 43200 < th dose independent rect. 10 12
984 963.94 humidity 60 43200 > th dose independent sin 4 NA