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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0795300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Extensin protein-like.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.36 (0.0515) R2 : 0.579
β1 : -1.87 (0.189) R2dD : 0.0958 R2D : 0.081
β2 : 1.93 (0.147) R2dC : 0.207 R2C : 0.32
β3 : 1.12 (0.125) R2dE : 0.106 R2E : 0.275
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.552 (0.116) R2dN8 : 0.0321 R2N8 : 0.03
σ : 0.951
deviance : 417.14
__
_____
C
peak time of C : 3.95
E
wheather : temperature
threshold : 25.52
memory length : 212
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 0.0167
open length of G : 21.9

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
416.77 0.959 6.37 -1.99 1.97 1.13 -0.391 0.556 -0.595 3.84 25.6 234 0.346 21.2
416.76 0.951 6.36 -1.87 1.93 1.13 -0.339 -- -0.554 3.93 25.53 212 0.0183 21.9
417.2 0.951 6.37 -1.98 1.97 1.13 -- 0.554 -0.594 3.84 25.6 236 0.327 21.3
417.14 0.951 6.36 -1.87 1.93 1.12 -- -- -0.552 3.95 25.52 212 0.0167 21.9
551.42 1.09 6.37 -1.85 -- 1.94 -- 0.753 -0.43 -- 26.5 233 0.124 22.8
479.86 1.03 6.41 -2.15 2.64 -- 0.16 -- -0.907 4.57 -- -- -- --
479.93 1.03 6.41 -2.15 2.64 -- -- -- -0.907 4.57 -- -- -- --
541.38 1.08 6.33 -1.62 -- 1.99 -- -- -0.316 -- 25.72 211 0.0333 23.5
507.37 1.05 6.32 -- 1.82 1.27 -- -- -0.426 3.94 25.7 200 0.133 21.9
850.4 1.36 6.43 -2.05 -- -- -- -- -0.838 -- -- -- -- --
601.66 1.15 6.36 -- 2.6 -- -- -- -0.668 4.59 -- -- -- --
599.2 1.14 6.25 -- -- 2.14 -- -- 0.0491 -- 25.75 211 0.0333 23.5
960.97 1.45 6.38 -- -- -- -- -- -0.611 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 422.85 radiation 1 1440 < th dose dependent rect. 8 9
12 426.48 temperature 20 10 > th dose dependent rect. 9 18
15 427.12 radiation 1 1440 < th dose dependent rect. 15 1
16 427.39 wind 9 14400 > th dose independent rect. 15 1
20 428.79 temperature 25 270 < th dose independent rect. 24 21
21 428.95 wind 9 14400 > th dose dependent rect. 15 1
25 429.59 temperature 25 90 < th dose independent rect. 3 19
29 429.80 humidity 90 14400 < th dose dependent rect. 22 9
33 430.36 wind 7 1440 > th dose dependent rect. 15 1
34 430.47 wind 9 14400 < th dose independent rect. 15 1
35 430.58 radiation 1 1440 < th dose independent rect. 11 7
36 430.66 temperature 20 10 > th dose dependent rect. 9 16
40 430.82 wind 7 1440 > th dose independent rect. 15 2
47 431.32 radiation 1 1440 > th dose independent rect. 8 8
50 431.45 temperature 30 90 < th dose dependent rect. 3 19
53 431.60 radiation 1 1440 > th dose independent rect. 11 7
57 431.83 wind 7 1440 < th dose independent rect. 15 2
58 432.02 temperature 15 90 > th dose dependent rect. 7 20
65 432.18 wind 1 43200 < th dose independent rect. 22 1
69 432.23 temperature 30 10 < th dose dependent rect. 11 11
72 432.30 temperature 10 270 > th dose dependent rect. 5 20
82 432.62 humidity 80 14400 > th dose independent rect. 21 5
94 432.96 temperature 15 270 > th dose dependent rect. 6 18
102 433.12 humidity 70 14400 > th dose dependent rect. 3 4
112 433.30 temperature 30 90 < th dose dependent rect. 11 11
124 433.50 wind 7 4320 > th dose independent rect. 17 1
127 433.51 temperature 20 10 > th dose dependent rect. 7 20
128 433.52 wind 1 43200 > th dose independent rect. 22 1
132 433.63 humidity 70 14400 > th dose dependent rect. 4 2
133 433.64 radiation 40 14400 < th dose dependent rect. 23 6
139 433.74 humidity 90 270 < th dose independent rect. 20 23
146 433.90 radiation 20 4320 < th dose dependent rect. 23 6
147 433.91 wind 7 4320 < th dose independent rect. 17 1
156 434.18 radiation 1 720 < th dose dependent rect. 19 23
165 434.33 wind 9 43200 > th dose independent rect. 13 3
166 434.33 radiation 1 720 < th dose dependent sin 0 NA
174 434.48 temperature 25 10 < th dose independent rect. 3 20
175 434.50 humidity 90 14400 < th dose dependent rect. 5 1
187 434.61 humidity 90 14400 < th dose dependent rect. 4 3
188 434.62 humidity 90 14400 < th dose independent rect. 4 2
190 434.65 wind 1 43200 < th dose dependent rect. 22 1
200 434.79 humidity 80 14400 < th dose independent rect. 21 4
203 434.81 temperature 25 10 > th dose dependent rect. 9 23
217 435.00 humidity 80 14400 < th dose independent rect. 22 1
225 435.04 temperature 25 10 > th dose dependent rect. 9 21
228 435.08 humidity 80 270 > th dose dependent rect. 24 22
230 435.12 radiation 1 720 < th dose independent rect. 14 17
234 435.14 humidity 90 270 < th dose independent rect. 3 23
238 435.22 temperature 20 10 > th dose dependent rect. 9 11
263 435.55 wind 9 43200 < th dose independent rect. 13 3
277 435.69 wind 7 43200 > th dose independent rect. 13 1
294 435.92 wind 5 4320 < th dose dependent rect. 21 2
304 436.00 radiation 1 720 < th dose dependent rect. 5 13
311 436.07 temperature 25 10 > th dose dependent rect. 17 23
324 436.23 humidity 80 90 > th dose dependent rect. 3 19
325 436.24 humidity 60 90 > th dose dependent rect. 3 19
360 436.65 humidity 90 270 < th dose independent no NA NA
365 436.68 temperature 25 90 > th dose independent rect. 9 18
368 436.72 temperature 25 90 < th dose independent rect. 11 11
369 436.73 temperature 30 30 < th dose independent rect. 3 15
372 436.75 humidity 90 270 < th dose independent rect. 9 23
381 436.87 radiation 1 720 < th dose independent rect. 19 23
394 437.02 radiation 1 1440 < th dose dependent rect. 11 12
404 437.15 humidity 90 270 < th dose independent rect. 12 23
417 437.26 wind 7 43200 < th dose independent rect. 13 1
420 437.30 radiation 1 720 < th dose independent rect. 3 15
445 437.46 radiation 1 720 < th dose independent sin 0 NA
448 437.47 radiation 1 720 > th dose independent rect. 13 17
459 437.53 radiation 1 720 < th dose dependent rect. 14 17
472 437.60 radiation 20 14400 > th dose independent rect. 16 1
493 437.63 radiation 1 720 > th dose independent rect. 15 15
505 437.70 humidity 90 270 > th dose independent rect. 24 23
561 438.02 wind 1 43200 < th dose independent rect. 18 9
566 438.05 radiation 1 720 < th dose dependent rect. 3 15
570 438.07 humidity 80 90 > th dose independent rect. 3 19
613 438.37 humidity 90 270 < th dose independent rect. 15 23
615 438.40 wind 1 43200 > th dose independent rect. 20 3
631 438.53 humidity 90 270 < th dose independent rect. 17 23
637 438.57 radiation 1 720 < th dose independent rect. 1 17
668 438.80 radiation 1 1440 < th dose dependent sin 21 NA
683 438.88 humidity 50 14400 > th dose dependent rect. 20 11
686 438.89 temperature 30 10 < th dose dependent rect. 8 14
687 438.89 humidity 80 270 > th dose dependent rect. 12 21
725 439.10 wind 5 4320 > th dose dependent rect. 17 2
740 439.15 temperature 25 270 > th dose independent rect. 5 21
756 439.21 wind 1 43200 > th dose independent rect. 18 5
771 439.27 humidity 60 90 > th dose dependent rect. 19 14
779 439.32 temperature 25 10 > th dose dependent rect. 21 23
781 439.34 temperature 25 270 > th dose independent rect. 20 23
787 439.38 humidity 50 270 > th dose dependent rect. 16 14
792 439.40 radiation 10 43200 < th dose dependent rect. 17 12
798 439.43 radiation 1 720 < th dose independent rect. 3 19
804 439.47 radiation 1 1440 < th dose independent rect. 11 12
819 439.51 radiation 1 720 < th dose independent rect. 24 23
838 439.59 radiation 40 43200 < th dose dependent rect. 17 9
865 439.67 radiation 1 720 > th dose independent rect. 5 13
868 439.67 humidity 60 90 > th dose dependent rect. 15 18
881 439.68 radiation 20 43200 < th dose dependent rect. 17 4
898 439.71 radiation 40 43200 > th dose dependent rect. 14 18
926 439.78 humidity 60 90 > th dose dependent rect. 13 20
930 439.79 humidity 80 270 > th dose dependent rect. 9 22
932 439.80 radiation 40 43200 > th dose dependent rect. 14 2
956 439.83 humidity 90 270 > th dose independent rect. 12 21
970 439.88 wind 5 4320 < th dose dependent rect. 19 4
999 439.97 temperature 25 270 > th dose independent rect. 15 23