Os03g0793700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cupin 1 domain containing protein.
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Os03g0793700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cupin 1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 147.86 | 0.571 | 7.72 | -0.427 | 2.45 | -0.84 | -0.137 | -1.44 | -0.599 | 7.25 | 21.9 | 840 | -- | -- |
| 152.98 | 0.576 | 7.67 | -0.0648 | 2.44 | -0.761 | 0.282 | -- | -0.498 | 7.3 | 22.2 | 776 | -- | -- |
| 147.89 | 0.566 | 7.72 | -0.422 | 2.45 | -0.841 | -- | -1.42 | -0.598 | 7.25 | 21.89 | 855 | -- | -- |
| 153.36 | 0.577 | 7.67 | -0.0462 | 2.44 | -0.749 | -- | -- | -0.496 | 7.28 | 22.25 | 764 | -- | -- |
| 371.6 | 0.898 | 7.73 | -0.263 | -- | -1.65 | -- | -1.14 | -0.245 | -- | 25.1 | 508 | -- | -- |
| 177.93 | 0.625 | 7.72 | -0.299 | 2.56 | -- | 0.45 | -- | -0.747 | 7.44 | -- | -- | -- | -- |
| 178.47 | 0.626 | 7.72 | -0.289 | 2.56 | -- | -- | -- | -0.748 | 7.43 | -- | -- | -- | -- |
| 363.41 | 0.888 | 7.64 | 0.252 | -- | -1.73 | -- | -- | -0.0164 | -- | 25.2 | 501 | -- | -- |
| 153.41 | 0.577 | 7.67 | -- | 2.44 | -0.757 | -- | -- | -0.488 | 7.28 | 22.28 | 764 | -- | -- |
| 527.93 | 1.07 | 7.78 | -0.248 | -- | -- | -- | -- | -0.706 | -- | -- | -- | -- | -- |
| 180.68 | 0.629 | 7.72 | -- | 2.56 | -- | -- | -- | -0.716 | 7.43 | -- | -- | -- | -- |
| 364.69 | 0.889 | 7.64 | -- | -- | -1.68 | -- | -- | -0.0502 | -- | 25.14 | 477 | -- | -- |
| 529.55 | 1.07 | 7.78 | -- | -- | -- | -- | -- | -0.679 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 138.23 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 2 | 138.62 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 3 | 140.28 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 4 | 140.28 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 5 | 143.24 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 6 | 144.20 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 8 | 145.71 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 12 | 146.73 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 24 | 147.66 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 25 | 147.67 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 26 | 147.68 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 2 |
| 27 | 147.68 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 9 |
| 28 | 147.68 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 31 | 148.03 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 2 |
| 35 | 148.15 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 6 |
| 42 | 148.29 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 14 |
| 45 | 148.33 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 4 |
| 54 | 148.63 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 56 | 148.63 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 4 |
| 65 | 148.77 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 66 | 148.83 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 4 |
| 68 | 148.84 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 8 |
| 76 | 148.99 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 10 |
| 83 | 149.07 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 14 |
| 84 | 149.07 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 14 |
| 88 | 149.15 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 92 | 149.19 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 14 |
| 95 | 149.21 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 103 | 149.30 | wind | 9.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 111 | 149.39 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 115 | 149.52 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 6 |
| 117 | 149.57 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 140 | 149.92 | wind | 9.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 143 | 149.98 | wind | 3.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 147 | 150.11 | wind | 9.0 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 157 | 150.20 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 162 | 150.25 | wind | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 168 | 150.28 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 22 | 8 |
| 172 | 150.33 | wind | 3.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 178 | 150.42 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 184 | 150.46 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 16 |
| 189 | 150.48 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 193 | 150.50 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 196 | 150.51 | wind | 9.0 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 229 | 150.71 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 263 | 150.98 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 265 | 151.00 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 23 | 5 |
| 283 | 151.14 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 308 | 151.27 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 310 | 151.29 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 312 | 151.30 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 320 | 151.36 | radiation | 40.0 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 334 | 151.43 | wind | 3.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 340 | 151.47 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 342 | 151.47 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 350 | 151.51 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 352 | 151.51 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 367 | 151.64 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 410 | 151.92 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 16 |
| 414 | 151.92 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 16 |
| 432 | 152.01 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 16 |
| 471 | 152.20 | wind | 3.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 489 | 152.29 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 505 | 152.38 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 10 | 3 |
| 534 | 152.55 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 535 | 152.55 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 19 | 1 |
| 542 | 152.59 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 563 | 152.71 | wind | 1.0 | 1440 | < th | dose independent | rect. | 12 | 7 |
| 568 | 152.72 | wind | 9.0 | 14400 | > th | dose independent | rect. | 5 | 8 |
| 578 | 152.77 | wind | 3.0 | 14400 | < th | dose dependent | sin | 9 | NA |
| 584 | 152.80 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 7 |
| 585 | 152.81 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 620 | 153.01 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 627 | 153.05 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 628 | 153.05 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 638 | 153.11 | wind | 1.0 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 646 | 153.13 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 24 | 20 |
| 662 | 153.23 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 684 | 153.32 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 686 | 153.32 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 689 | 153.36 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 695 | 153.40 | wind | 1.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 709 | 153.48 | wind | 1.0 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 722 | 153.52 | radiation | 40.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 766 | 153.54 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 810 | 153.76 | temperature | 25.0 | 270 | < th | dose independent | rect. | 23 | 12 |
| 811 | 153.76 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 836 | 153.97 | wind | 1.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 891 | 154.21 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 894 | 154.22 | temperature | 25.0 | 270 | < th | dose independent | rect. | 23 | 14 |
| 907 | 154.28 | wind | 9.0 | 14400 | > th | dose independent | rect. | 1 | 12 |
| 916 | 154.32 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 919 | 154.33 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 990 | 154.67 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 4 |