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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0790500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Esterase/lipase/thioesterase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.96 (0.11) R2 : 0.438
β1 : -2.57 (0.714) R2dD : 0.12 R2D : -0.324
β2 : 1.36 (0.172) R2dC : 0.078 R2C : 0.0584
β3 : -2.47 (0.523) R2dE : 0.0899 R2E : -0.131
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 32 (3.93) R2dD*E : 0.693 R2D*E : 0.118
γ1 : 0.925 (0.2) R2dN8 : 0.0592 R2N8 : 0.055
σ : 1.35
deviance : 843.15
__
_____
C
peak time of C : 23.8
E
wheather : temperature
threshold : 25
memory length : 4407
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 1.22
open length of G : 7.77

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
836.83 1.36 5.95 -2.47 1.36 -2.43 1.23 31.9 0.941 23.9 24.98 4417 1.22 7.77
967.04 1.45 5.35 1.27 1.24 -1.47 1.08 -- 1.51 0.674 13.9 46653 1.43 7.61
843.15 1.35 5.96 -2.57 1.36 -2.47 -- 32 0.925 23.8 25 4407 1.22 7.77
968.36 1.45 5.36 1.27 1.26 -1.37 -- -- 1.55 23.6 14 46438 1.17 7.6
959.4 1.44 5.93 -2.49 -- -2.55 -- 31.8 0.954 -- 24.99 4414 1.2 7.77
984.37 1.47 5.29 2.62 1.29 -- 1.27 -- 1.96 23.8 -- -- -- --
991.17 1.47 5.29 2.57 1.28 -- -- -- 1.96 23.6 -- -- -- --
1069.08 1.52 5.36 1.46 -- -1.35 -- -- 1.58 -- 14.1 46738 0.514 7.55
985.9 1.46 5.49 -- 1.15 -2.43 -- -- 1.19 23.9 15.5 47520 5.92 13.8
1094.65 1.55 5.26 2.6 -- -- -- -- 1.97 -- -- -- -- --
1164.94 1.6 5.36 -- 1.31 -- -- -- 1.67 23.7 -- -- -- --
1079.28 1.53 5.42 -- -- -2.36 -- -- 1.27 -- 15.6 47520 7.86 10.9
1273.44 1.67 5.33 -- -- -- -- -- 1.68 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 850.78 temperature 25 4320 < th dose independent rect. 1 8
5 852.27 wind 1 43200 > th dose independent rect. 10 2
7 855.41 temperature 25 4320 > th dose dependent rect. 23 10
9 855.70 temperature 20 90 > th dose dependent rect. 15 23
10 856.35 wind 1 43200 < th dose independent rect. 10 1
11 856.47 temperature 25 4320 < th dose independent rect. 7 1
13 857.02 temperature 25 4320 > th dose dependent rect. 1 8
16 857.20 temperature 25 4320 > th dose independent rect. 23 10
17 857.20 wind 1 43200 < th dose dependent rect. 10 1
22 858.17 temperature 25 4320 > th dose independent rect. 7 1
31 859.26 temperature 25 4320 > th dose independent rect. 2 7
32 859.29 temperature 20 270 > th dose dependent rect. 13 23
37 860.53 atmosphere 1000 90 > th dose independent rect. 17 23
38 860.78 temperature 20 10 > th dose dependent rect. 13 23
41 860.98 temperature 20 90 > th dose dependent rect. 7 23
46 861.62 temperature 20 10 > th dose dependent rect. 8 22
53 861.98 temperature 20 90 > th dose dependent rect. 5 23
54 862.00 radiation 1 4320 < th dose independent rect. 5 1
55 862.07 wind 1 43200 < th dose dependent rect. 16 10
56 862.15 radiation 1 4320 > th dose independent rect. 5 1
60 862.88 temperature 20 90 > th dose dependent rect. 20 23
61 862.89 temperature 20 10 > th dose dependent rect. 3 23
66 863.02 temperature 20 90 > th dose dependent no NA NA
70 863.31 temperature 20 10 > th dose dependent rect. 23 23
71 863.40 temperature 20 10 > th dose dependent rect. 11 23
74 863.65 atmosphere 1000 10 > th dose independent rect. 19 23
76 863.68 temperature 20 90 > th dose dependent rect. 3 23
79 863.82 wind 1 43200 > th dose independent rect. 19 7
84 864.21 temperature 20 10 > th dose dependent rect. 21 23
88 864.41 humidity 80 14400 < th dose dependent rect. 4 1
89 864.43 wind 1 43200 < th dose independent rect. 19 7
94 864.68 wind 1 43200 > th dose independent rect. 21 5
97 864.75 temperature 20 10 > th dose dependent no NA NA
127 865.96 temperature 20 10 > th dose dependent rect. 1 23
133 866.14 temperature 25 4320 < th dose independent sin 9 NA
144 866.57 wind 1 43200 < th dose independent rect. 21 5
150 866.84 wind 1 43200 < th dose independent rect. 17 9
207 868.41 temperature 20 10 > th dose dependent rect. 15 23
213 868.63 wind 1 43200 < th dose dependent rect. 19 7
220 868.77 wind 3 14400 < th dose dependent rect. 6 6
229 869.01 wind 3 14400 > th dose independent rect. 1 15
230 869.02 wind 1 43200 > th dose independent rect. 17 9
233 869.09 radiation 1 4320 < th dose independent rect. 3 3
237 869.25 radiation 1 4320 < th dose independent rect. 20 10
242 869.41 radiation 1 4320 < th dose independent rect. 22 8
254 869.67 temperature 30 4320 < th dose independent rect. 15 21
256 869.70 wind 3 14400 < th dose independent rect. 1 15
259 869.75 temperature 25 4320 > th dose independent sin 9 NA
275 870.00 wind 9 14400 < th dose independent rect. 13 1
298 870.60 temperature 20 10 > th dose dependent sin 16 NA
309 870.98 temperature 25 4320 > th dose dependent sin 10 NA
315 871.10 wind 1 43200 < th dose dependent rect. 19 3
374 872.56 wind 1 43200 > th dose independent rect. 2 1
379 872.64 temperature 30 4320 < th dose independent rect. 11 1
380 872.64 temperature 30 4320 > th dose independent rect. 15 21
390 872.85 atmosphere 1000 30 < th dose independent rect. 6 22
391 872.86 wind 7 270 > th dose dependent sin 15 NA
400 872.97 temperature 25 4320 > th dose dependent rect. 16 18
403 873.01 atmosphere 1000 10 > th dose independent rect. 15 23
405 873.05 wind 9 270 < th dose independent sin 11 NA
431 873.63 wind 1 43200 < th dose dependent rect. 11 15
442 873.78 wind 7 90 > th dose dependent sin 12 NA
444 873.82 wind 3 14400 > th dose independent rect. 22 19
467 874.20 atmosphere 1000 30 < th dose independent rect. 1 23
469 874.20 temperature 30 4320 > th dose dependent rect. 9 7
484 874.24 atmosphere 1000 30 < th dose independent rect. 17 23
485 874.24 temperature 30 4320 > th dose dependent rect. 11 4
523 874.39 atmosphere 1000 30 < th dose independent rect. 11 23
526 874.42 atmosphere 1000 30 < th dose independent no NA NA
527 874.42 atmosphere 1000 30 > th dose independent rect. 21 23
528 874.42 atmosphere 1000 30 < th dose independent rect. 9 23
534 874.49 atmosphere 1000 30 < th dose independent rect. 15 23
535 874.49 atmosphere 1000 30 < th dose independent rect. 19 23
536 874.49 atmosphere 1000 30 < th dose independent rect. 21 23
542 874.54 wind 3 14400 < th dose independent sin 3 NA
545 874.57 temperature 30 4320 > th dose independent rect. 9 4
547 874.60 atmosphere 1000 30 < th dose independent rect. 23 23
551 874.65 atmosphere 1000 30 < th dose independent rect. 13 23
555 874.66 wind 3 14400 < th dose independent rect. 22 19
581 874.74 atmosphere 1000 30 < th dose independent rect. 3 23
584 874.75 wind 9 14400 > th dose independent rect. 13 1
595 874.82 temperature 25 4320 < th dose independent rect. 17 16
598 874.84 temperature 30 4320 > th dose dependent sin 4 NA
599 874.85 wind 3 14400 > th dose independent sin 3 NA
603 874.87 wind 7 270 > th dose dependent rect. 13 22
606 874.91 atmosphere 1000 10 > th dose independent no NA NA
664 875.20 wind 3 14400 < th dose independent rect. 5 9
669 875.22 temperature 30 4320 > th dose dependent rect. 13 23
670 875.22 atmosphere 1000 10 < th dose dependent rect. 5 23
672 875.28 radiation 40 43200 > th dose independent rect. 13 1
675 875.30 temperature 30 4320 > th dose independent rect. 11 1
688 875.39 atmosphere 1000 10 < th dose dependent rect. 17 23
708 875.45 atmosphere 1000 10 < th dose dependent rect. 7 23
732 875.54 temperature 30 4320 > th dose dependent no NA NA
830 875.57 temperature 30 4320 > th dose dependent rect. 11 23
851 875.65 atmosphere 1000 10 < th dose dependent rect. 21 23
855 875.67 atmosphere 1000 10 < th dose dependent rect. 15 23
856 875.70 temperature 30 4320 > th dose dependent rect. 13 2
881 875.80 atmosphere 1000 10 < th dose dependent no NA NA
883 875.80 atmosphere 1000 10 < th dose dependent rect. 19 23
884 875.81 wind 9 270 > th dose independent sin 11 NA
894 875.91 atmosphere 1000 10 > th dose independent rect. 11 23
896 875.95 atmosphere 1000 10 < th dose dependent rect. 9 23
904 875.99 atmosphere 1000 10 < th dose dependent rect. 11 23
910 876.04 atmosphere 1000 10 < th dose dependent rect. 1 23
926 876.17 humidity 80 14400 > th dose independent rect. 2 2
935 876.26 wind 3 14400 < th dose independent rect. 19 22
953 876.41 atmosphere 1000 10 < th dose dependent rect. 13 23
954 876.42 wind 3 14400 > th dose independent rect. 5 9
968 876.47 atmosphere 1000 10 < th dose dependent rect. 23 23
977 876.54 atmosphere 1000 30 < th dose dependent rect. 3 23