Os03g0790000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0790000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 363.82 | 0.896 | 3.26 | 0.334 | 0.0585 | 1.58 | 0.46 | 3.25 | 0.0955 | 7.7 | 25.24 | 77 | -- | -- |
| 377.71 | 0.912 | 3.21 | 0.808 | 0.0401 | 1.22 | 1.11 | -- | 0.197 | 3.61 | 26.4 | 84 | -- | -- |
| 364.15 | 0.889 | 3.26 | 0.343 | 0.057 | 1.54 | -- | 3.16 | 0.0976 | 7.67 | 25.6 | 60 | -- | -- |
| 380.2 | 0.908 | 3.2 | 0.833 | 0.0165 | 1.32 | -- | -- | 0.215 | 3.45 | 26.6 | 84 | -- | -- |
| 364.3 | 0.889 | 3.26 | 0.344 | -- | 1.53 | -- | 3.12 | 0.103 | -- | 25.65 | 60 | -- | -- |
| 400.84 | 0.939 | 3.26 | 0.531 | 0.348 | -- | 1.1 | -- | -0.0691 | 2.97 | -- | -- | -- | -- |
| 404.86 | 0.942 | 3.27 | 0.506 | 0.351 | -- | -- | -- | -0.0753 | 2.68 | -- | -- | -- | -- |
| 380.17 | 0.908 | 3.2 | 0.831 | -- | 1.32 | -- | -- | 0.22 | -- | 26.59 | 62 | -- | -- |
| 396.29 | 0.927 | 3.24 | -- | 0.132 | 0.978 | -- | -- | 0.0587 | 3.83 | 26.3 | 49 | -- | -- |
| 412.04 | 0.949 | 3.27 | 0.521 | -- | -- | -- | -- | -0.0664 | -- | -- | -- | -- | -- |
| 411.61 | 0.949 | 3.28 | -- | 0.361 | -- | -- | -- | -0.132 | 2.69 | -- | -- | -- | -- |
| 396.99 | 0.928 | 3.23 | -- | -- | 1.06 | -- | -- | 0.0759 | -- | 26.5 | 50 | -- | -- |
| 419.2 | 0.956 | 3.28 | -- | -- | -- | -- | -- | -0.124 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 352.88 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 4 | 19 |
| 2 | 355.89 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 3 | 356.35 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 4 | 22 |
| 6 | 356.54 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 17 | 16 |
| 20 | 357.79 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 16 | 19 |
| 30 | 358.24 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 17 | 14 |
| 105 | 361.29 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 113 | 361.47 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 117 | 361.55 | temperature | 25.0 | 720 | < th | dose independent | rect. | 18 | 1 |
| 124 | 361.72 | temperature | 25.0 | 720 | < th | dose independent | rect. | 18 | 3 |
| 143 | 362.11 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 22 | 3 |
| 144 | 362.13 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 167 | 362.53 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 20 | 11 |
| 168 | 362.54 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 195 | 363.06 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 198 | 363.09 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 202 | 363.15 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 234 | 363.57 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 279 | 364.08 | temperature | 25.0 | 90 | < th | dose dependent | no | NA | NA |
| 338 | 364.61 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 341 | 364.65 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 359 | 364.81 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 405 | 365.15 | temperature | 25.0 | 4320 | < th | dose independent | sin | 12 | NA |
| 420 | 365.32 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 435 | 365.44 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 436 | 365.44 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 439 | 365.46 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 445 | 365.50 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 496 | 365.81 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 497 | 365.82 | radiation | 30.0 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 504 | 365.84 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 23 | 2 |
| 534 | 366.01 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 546 | 366.11 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 16 | 11 |
| 606 | 366.38 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 2 | 5 |
| 612 | 366.43 | radiation | 10.0 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 633 | 366.55 | temperature | 25.0 | 4320 | > th | dose independent | sin | 12 | NA |
| 763 | 367.12 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 808 | 367.28 | radiation | 10.0 | 4320 | > th | dose independent | rect. | 15 | 16 |
| 901 | 367.64 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 15 | 16 |
| 951 | 367.81 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 959 | 367.85 | temperature | 20.0 | 4320 | > th | dose dependent | sin | 12 | NA |
| 976 | 367.89 | radiation | 30.0 | 4320 | < th | dose dependent | rect. | 15 | 8 |
| 1000 | 367.93 | radiation | 30.0 | 4320 | < th | dose dependent | rect. | 15 | 6 |