Os03g0789300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os03g0789300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 147.12 | 0.57 | 2.88 | -0.366 | 0.0924 | 14.8 | -0.576 | -53.4 | -0.0524 | 0.441 | 79.76 | 93 | 0.0198 | 3 |
| 169.18 | 0.61 | 2.86 | -0.297 | 0.141 | 2.35 | -0.891 | -- | -0.0858 | 1.98 | 79.76 | 93 | 0.0198 | 3 |
| 148.03 | 0.567 | 2.88 | -0.317 | 0.0971 | 14.4 | -- | -51.6 | -0.0416 | 23.6 | 79.59 | 94 | 0.185 | 2.78 |
| 157.98 | 0.585 | 2.85 | -0.288 | 0.108 | 2.54 | -- | -- | -0.0775 | 1.87 | 81.01 | 142 | 0.101 | 3.1 |
| 148.25 | 0.567 | 2.88 | -0.324 | -- | 13.3 | -- | -46.4 | -0.049 | -- | 79.65 | 95 | 0.159 | 2.83 |
| 174.64 | 0.62 | 2.86 | -0.277 | 0.16 | -- | -0.815 | -- | -0.0903 | 1.93 | -- | -- | -- | -- |
| 177.2 | 0.623 | 2.86 | -0.252 | 0.159 | -- | -- | -- | -0.0855 | 1.68 | -- | -- | -- | -- |
| 158.02 | 0.585 | 2.85 | -0.233 | -- | 2.92 | -- | -- | -0.0542 | -- | 81.13 | 142 | 0.125 | 3.07 |
| 159.11 | 0.587 | 2.85 | -- | 0.105 | 2.83 | -- | -- | -0.0414 | 1.32 | 81.08 | 142 | 0.115 | 3.1 |
| 178.73 | 0.625 | 2.86 | -0.246 | -- | -- | -- | -- | -0.0819 | -- | -- | -- | -- | -- |
| 178.87 | 0.626 | 2.85 | -- | 0.154 | -- | -- | -- | -0.0574 | 1.63 | -- | -- | -- | -- |
| 159.45 | 0.588 | 2.85 | -- | -- | 2.93 | -- | -- | -0.0284 | -- | 81.13 | 142 | 0.123 | 3.07 |
| 180.32 | 0.627 | 2.85 | -- | -- | -- | -- | -- | -0.0547 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 147.70 | humidity | 90 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 4 | 148.15 | humidity | 80 | 90 | < th | dose independent | rect. | 24 | 3 |
| 11 | 149.28 | humidity | 90 | 90 | < th | dose independent | rect. | 3 | 1 |
| 17 | 149.46 | humidity | 90 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 24 | 149.71 | humidity | 90 | 10 | < th | dose independent | rect. | 3 | 1 |
| 49 | 154.24 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 3 | 1 |
| 68 | 161.89 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 3 | 1 |
| 91 | 163.40 | temperature | 20 | 10 | < th | dose dependent | rect. | 2 | 2 |
| 132 | 164.59 | humidity | 90 | 90 | > th | dose dependent | rect. | 18 | 17 |
| 140 | 164.68 | humidity | 90 | 90 | > th | dose dependent | rect. | 19 | 12 |
| 149 | 164.76 | humidity | 80 | 720 | > th | dose independent | rect. | 19 | 2 |
| 153 | 164.77 | humidity | 90 | 90 | > th | dose dependent | rect. | 18 | 20 |
| 180 | 164.97 | temperature | 20 | 90 | < th | dose independent | rect. | 2 | 1 |
| 185 | 165.01 | humidity | 90 | 90 | > th | dose dependent | sin | 9 | NA |
| 231 | 165.49 | humidity | 50 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 235 | 165.54 | humidity | 90 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 263 | 165.83 | humidity | 90 | 90 | > th | dose independent | rect. | 21 | 10 |
| 265 | 165.84 | humidity | 90 | 90 | > th | dose dependent | rect. | 13 | 22 |
| 268 | 165.86 | humidity | 90 | 90 | < th | dose independent | sin | 8 | NA |
| 272 | 165.88 | humidity | 90 | 90 | > th | dose dependent | rect. | 11 | 20 |
| 283 | 165.92 | humidity | 90 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 293 | 165.97 | humidity | 90 | 90 | > th | dose dependent | no | NA | NA |
| 296 | 165.98 | humidity | 90 | 90 | > th | dose independent | sin | 8 | NA |
| 304 | 166.00 | humidity | 90 | 90 | > th | dose dependent | rect. | 13 | 18 |
| 329 | 166.07 | humidity | 90 | 90 | > th | dose independent | rect. | 21 | 14 |
| 440 | 166.62 | humidity | 80 | 720 | > th | dose independent | rect. | 18 | 12 |
| 460 | 166.70 | humidity | 90 | 270 | < th | dose independent | rect. | 13 | 15 |
| 471 | 166.75 | humidity | 50 | 720 | > th | dose dependent | rect. | 18 | 12 |
| 583 | 167.02 | humidity | 90 | 270 | < th | dose independent | rect. | 11 | 21 |
| 602 | 167.10 | humidity | 90 | 90 | < th | dose independent | rect. | 1 | 16 |
| 606 | 167.11 | humidity | 90 | 90 | > th | dose independent | rect. | 21 | 17 |
| 725 | 167.40 | humidity | 70 | 10 | > th | dose independent | rect. | 14 | 14 |
| 781 | 167.56 | temperature | 30 | 90 | < th | dose independent | rect. | 4 | 11 |
| 848 | 167.70 | wind | 1 | 10 | > th | dose independent | rect. | 2 | 2 |
| 929 | 167.91 | humidity | 80 | 720 | < th | dose independent | rect. | 19 | 2 |
| 934 | 167.91 | humidity | 90 | 90 | > th | dose independent | rect. | 2 | 22 |
| 937 | 167.92 | humidity | 90 | 90 | < th | dose independent | rect. | 1 | 23 |
| 948 | 167.94 | radiation | 1 | 720 | < th | dose dependent | rect. | 18 | 7 |
| 967 | 167.99 | temperature | 30 | 720 | < th | dose independent | rect. | 18 | 7 |
| 976 | 168.01 | wind | 5 | 43200 | > th | dose dependent | rect. | 22 | 3 |