FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0788100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to RING-H2 finger protein ATL1P (RING-H2 finger protein ATL3).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.87 (0.0378) R2 : 0.00307
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0943 (0.0796) R2dN8 : 0.00396 R2N8 : 0.00307
σ : 0.712
deviance : 232.67
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
212.44 0.685 2.87 -0.0454 0.0541 2.08 -0.586 -0.663 -0.0548 1.33 0.5721 399 -- --
212.33 0.679 2.87 -0.0302 0.0514 1.82 -0.588 -- -0.054 1.29 0.7407 398 -- --
213.75 0.681 2.87 -0.0231 0.062 2.03 -- -0.904 -0.0539 2.54 0.7131 398 -- --
213.72 0.681 2.86 -0.012 0.0596 1.81 -- -- -0.0514 2.51 0.7061 398 -- --
213.91 0.681 2.86 -0.00835 -- 1.62 -- 0.818 -0.0533 -- 0.7349 398 -- --
230.94 0.712 2.87 0.114 0.101 -- -0.404 -- -0.0843 1.57 -- -- -- --
231.42 0.712 2.87 0.128 0.113 -- -- -- -0.081 23.6 -- -- -- --
213.93 0.681 2.86 -0.00665 -- 1.79 -- -- -0.051 -- 0.7371 398 -- --
213.71 0.681 2.86 -- 0.0615 1.79 -- -- -0.0519 3.04 0.7337 398 -- --
232.22 0.712 2.87 0.131 -- -- -- -- -0.0798 -- -- -- -- --
231.85 0.712 2.88 -- 0.114 -- -- -- -0.0953 23.6 -- -- -- --
213.93 0.681 2.86 -- -- 1.79 -- -- -0.0503 -- 0.7378 398 -- --
232.67 0.712 2.87 -- -- -- -- -- -0.0943 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 204.47 radiation 10.0 30 < th dose dependent rect. 11 1
5 204.70 radiation 10.0 30 < th dose independent rect. 11 2
34 209.77 radiation 10.0 90 < th dose independent rect. 8 4
36 209.94 humidity 90.0 90 < th dose independent rect. 2 2
37 210.41 precipitation 0.1 1440 > th dose dependent rect. 18 1
39 210.79 precipitation 0.1 1440 > th dose independent rect. 18 1
40 211.29 wind 1.0 10 < th dose independent rect. 12 4
42 211.30 wind 1.0 10 < th dose dependent rect. 13 3
44 211.32 wind 1.0 10 < th dose independent rect. 14 2
74 211.80 wind 1.0 90 < th dose dependent rect. 13 5
82 211.96 wind 1.0 90 < th dose dependent rect. 13 2
90 212.06 wind 1.0 90 < th dose independent rect. 12 6
132 212.30 wind 1.0 90 < th dose independent rect. 12 1
159 213.00 humidity 90.0 90 < th dose dependent rect. 2 1
176 213.17 wind 1.0 10 < th dose dependent rect. 8 8
239 214.49 wind 1.0 10 < th dose independent rect. 8 8
267 215.00 precipitation 0.1 270 > th dose independent rect. 21 1
276 215.00 precipitation 0.1 270 > th dose dependent rect. 21 1
370 216.41 wind 1.0 30 < th dose independent rect. 6 12
385 216.56 humidity 90.0 270 > th dose dependent rect. 19 2
410 216.95 temperature 25.0 90 > th dose independent rect. 2 1
425 217.42 wind 1.0 30 < th dose independent sin 22 NA
439 217.72 precipitation 0.1 270 > th dose independent rect. 17 6
446 217.78 wind 1.0 30 < th dose dependent sin 22 NA
453 217.96 temperature 25.0 90 > th dose dependent rect. 2 1
461 218.10 precipitation 0.1 270 > th dose dependent rect. 17 6
465 218.12 wind 1.0 30 < th dose dependent rect. 13 14
466 218.15 precipitation 0.1 270 > th dose dependent rect. 17 3
475 218.21 wind 1.0 720 < th dose independent rect. 18 1
481 218.22 precipitation 0.1 720 > th dose dependent rect. 16 13
489 218.28 precipitation 0.1 720 > th dose dependent rect. 3 17
505 218.38 precipitation 0.1 720 > th dose dependent sin 1 NA
514 218.40 wind 1.0 30 < th dose dependent rect. 10 17
516 218.43 precipitation 0.1 720 > th dose dependent sin 13 NA
520 218.48 wind 1.0 720 < th dose dependent rect. 18 1
522 218.52 precipitation 0.1 720 > th dose independent rect. 3 16
534 218.61 precipitation 0.1 720 > th dose dependent rect. 16 22
544 218.66 precipitation 0.1 720 > th dose dependent rect. 13 16
549 218.71 precipitation 0.1 720 > th dose dependent rect. 16 17
551 218.72 temperature 25.0 90 > th dose independent rect. 21 8
552 218.73 atmosphere 995.0 1440 > th dose independent rect. 14 15
557 218.74 precipitation 0.1 720 > th dose dependent rect. 13 20
565 218.78 wind 1.0 30 < th dose independent rect. 13 14
568 218.79 atmosphere 995.0 1440 > th dose independent rect. 3 14
600 218.95 precipitation 0.1 720 > th dose independent rect. 16 12
604 218.96 precipitation 0.1 720 > th dose dependent rect. 7 22
606 218.98 wind 1.0 720 < th dose dependent rect. 17 3
623 219.02 precipitation 0.1 720 > th dose independent sin 1 NA
659 219.13 atmosphere 1015.0 1440 < th dose independent rect. 13 1
660 219.13 precipitation 0.1 720 > th dose dependent no NA NA
668 219.15 atmosphere 1015.0 1440 > th dose independent rect. 12 1
671 219.15 atmosphere 1015.0 1440 > th dose dependent rect. 12 1
758 219.33 precipitation 0.1 720 > th dose dependent rect. 19 23
762 219.36 wind 1.0 30 < th dose independent rect. 10 17
796 219.47 wind 1.0 30 < th dose dependent rect. 8 19
813 219.51 wind 1.0 30 < th dose dependent sin 19 NA
820 219.53 atmosphere 995.0 1440 > th dose independent rect. 16 13
828 219.56 precipitation 0.1 270 > th dose dependent rect. 10 13
832 219.57 atmosphere 1010.0 720 > th dose dependent rect. 1 1
855 219.63 precipitation 0.1 720 < th dose independent sin 2 NA
857 219.63 precipitation 0.1 720 < th dose dependent sin 2 NA
858 219.64 precipitation 0.1 1440 < th dose independent rect. 18 5
862 219.64 precipitation 0.1 1440 < th dose dependent rect. 18 5
865 219.66 precipitation 0.1 1440 < th dose independent rect. 18 2
867 219.66 precipitation 0.1 1440 < th dose dependent rect. 18 2
873 219.68 atmosphere 995.0 1440 > th dose independent rect. 3 18
884 219.70 atmosphere 995.0 1440 > th dose independent rect. 14 7
885 219.70 precipitation 0.1 1440 < th dose independent rect. 18 7
887 219.70 precipitation 0.1 1440 < th dose dependent rect. 18 7
916 219.76 precipitation 0.1 270 > th dose independent sin 16 NA
921 219.78 precipitation 0.1 270 < th dose independent sin 16 NA
923 219.78 temperature 25.0 10 > th dose independent rect. 21 8
925 219.78 precipitation 0.1 270 < th dose dependent sin 16 NA
936 219.80 atmosphere 1015.0 1440 < th dose independent rect. 12 7
963 219.87 wind 1.0 30 > th dose independent sin 22 NA
984 219.91 precipitation 0.1 270 > th dose dependent rect. 8 15
993 219.94 wind 1.0 30 < th dose independent rect. 8 19