Os03g0787400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os03g0787400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 251.38 | 0.745 | 3.94 | -0.593 | 4.47 | -2.92 | -2.9 | 2.26 | -0.116 | 0.892 | 14.86 | 285 | 19 | 10.8 |
| 258 | 0.748 | 3.94 | -0.592 | 4.46 | -2.91 | -0.791 | -- | -0.106 | 0.878 | 14.9 | 286 | 19 | 10.8 |
| 259.94 | 0.751 | 3.94 | -0.52 | 4.55 | -2.97 | -- | 0.117 | -0.108 | 0.879 | 15.02 | 290 | 19 | 10.7 |
| 259.5 | 0.75 | 3.94 | -0.585 | 4.65 | -3.08 | -- | -- | -0.128 | 0.933 | 15.03 | 284 | 19 | 10.8 |
| 297.5 | 0.803 | 3.88 | -0.671 | -- | -1.86 | -- | 0.703 | -0.122 | -- | -4.57 | 2546 | 19 | 11.2 |
| 304.4 | 0.818 | 3.95 | -0.728 | 2.21 | -- | -1.44 | -- | -0.122 | 21.5 | -- | -- | -- | -- |
| 312.03 | 0.827 | 3.95 | -0.675 | 2.21 | -- | -- | -- | -0.12 | 21.5 | -- | -- | -- | -- |
| 301.84 | 0.809 | 3.89 | -0.625 | -- | -2.12 | -- | -- | -0.113 | -- | 1.423 | 2455 | 20.1 | 9.7 |
| 267.84 | 0.762 | 3.94 | -- | 4.66 | -3.09 | -- | -- | -0.0918 | 0.961 | 15.08 | 286 | 19 | 10.8 |
| 599.79 | 1.14 | 3.89 | -0.66 | -- | -- | -- | -- | -0.126 | -- | -- | -- | -- | -- |
| 324.04 | 0.842 | 3.93 | -- | 2.21 | -- | -- | -- | -0.0448 | 21.5 | -- | -- | -- | -- |
| 312.88 | 0.824 | 3.87 | -- | -- | -2.11 | -- | -- | -0.0481 | -- | 1.565 | 2458 | 20 | 9.7 |
| 611.28 | 1.15 | 3.87 | -- | -- | -- | -- | -- | -0.053 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 252.51 | temperature | 15 | 270 | > th | dose independent | rect. | 19 | 11 |
| 3 | 258.03 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 3 |
| 5 | 260.69 | temperature | 20 | 270 | < th | dose dependent | rect. | 17 | 6 |
| 6 | 260.75 | radiation | 10 | 720 | < th | dose dependent | rect. | 12 | 6 |
| 18 | 262.39 | temperature | 15 | 270 | > th | dose independent | rect. | 11 | 13 |
| 19 | 262.68 | temperature | 25 | 720 | < th | dose dependent | rect. | 12 | 7 |
| 25 | 263.84 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 4 |
| 28 | 263.93 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 10 |
| 29 | 263.95 | temperature | 15 | 1440 | > th | dose independent | rect. | 19 | 2 |
| 31 | 264.16 | temperature | 20 | 270 | < th | dose dependent | rect. | 19 | 2 |
| 41 | 264.86 | humidity | 80 | 720 | > th | dose dependent | rect. | 12 | 3 |
| 43 | 264.89 | temperature | 15 | 270 | > th | dose independent | rect. | 19 | 21 |
| 46 | 264.99 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 3 |
| 48 | 265.06 | radiation | 20 | 720 | < th | dose dependent | rect. | 15 | 2 |
| 62 | 265.59 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 66 | 265.86 | temperature | 15 | 30 | > th | dose independent | rect. | 22 | 19 |
| 70 | 265.98 | humidity | 90 | 720 | < th | dose dependent | rect. | 12 | 3 |
| 71 | 266.00 | temperature | 15 | 10 | > th | dose independent | rect. | 20 | 22 |
| 73 | 266.11 | radiation | 10 | 720 | > th | dose independent | rect. | 12 | 6 |
| 110 | 266.70 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 5 |
| 112 | 266.71 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 10 |
| 120 | 267.18 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 3 |
| 127 | 267.28 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 10 |
| 131 | 267.42 | temperature | 20 | 90 | > th | dose dependent | rect. | 18 | 9 |
| 140 | 267.63 | radiation | 10 | 720 | > th | dose independent | sin | 15 | NA |
| 151 | 267.84 | radiation | 1 | 720 | > th | dose dependent | rect. | 14 | 5 |
| 167 | 267.95 | radiation | 1 | 720 | > th | dose dependent | rect. | 12 | 7 |
| 198 | 268.09 | temperature | 15 | 720 | > th | dose independent | rect. | 19 | 4 |
| 204 | 268.20 | temperature | 15 | 10 | > th | dose independent | rect. | 20 | 11 |
| 207 | 268.25 | radiation | 10 | 720 | > th | dose dependent | rect. | 16 | 2 |
| 271 | 268.66 | radiation | 1 | 720 | > th | dose dependent | rect. | 14 | 1 |
| 275 | 268.69 | temperature | 20 | 270 | < th | dose dependent | sin | 18 | NA |
| 309 | 269.01 | humidity | 80 | 720 | > th | dose independent | rect. | 12 | 2 |
| 317 | 269.13 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 18 | 4 |
| 362 | 269.52 | humidity | 60 | 720 | > th | dose dependent | rect. | 12 | 7 |
| 365 | 269.60 | radiation | 1 | 720 | > th | dose dependent | sin | 15 | NA |
| 378 | 269.74 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 6 |
| 383 | 269.81 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 18 |
| 386 | 269.86 | radiation | 20 | 720 | > th | dose independent | rect. | 14 | 1 |
| 416 | 270.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 7 |
| 469 | 270.56 | radiation | 20 | 720 | < th | dose independent | rect. | 15 | 2 |
| 513 | 270.65 | radiation | 20 | 720 | < th | dose independent | rect. | 12 | 6 |
| 523 | 270.79 | temperature | 25 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 575 | 271.11 | temperature | 15 | 720 | > th | dose independent | rect. | 12 | 9 |
| 596 | 271.17 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 5 |
| 616 | 271.44 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 3 |
| 620 | 271.49 | temperature | 15 | 10 | > th | dose independent | rect. | 22 | 9 |
| 625 | 271.54 | temperature | 25 | 720 | > th | dose independent | rect. | 12 | 7 |
| 627 | 271.55 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 2 |
| 656 | 271.67 | humidity | 70 | 720 | > th | dose independent | rect. | 13 | 6 |
| 732 | 272.02 | radiation | 1 | 90 | < th | dose dependent | rect. | 13 | 6 |
| 735 | 272.08 | humidity | 90 | 30 | < th | dose independent | rect. | 20 | 6 |
| 747 | 272.19 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 5 |
| 764 | 272.37 | temperature | 15 | 720 | > th | dose independent | rect. | 11 | 4 |
| 789 | 272.50 | radiation | 1 | 90 | < th | dose dependent | rect. | 8 | 11 |
| 790 | 272.50 | radiation | 1 | 30 | < th | dose dependent | rect. | 7 | 13 |
| 835 | 272.83 | radiation | 10 | 720 | > th | dose independent | rect. | 16 | 2 |
| 885 | 273.14 | atmosphere | 1010 | 270 | < th | dose dependent | rect. | 17 | 2 |
| 888 | 273.19 | temperature | 15 | 10 | > th | dose independent | rect. | 23 | 23 |
| 894 | 273.24 | humidity | 90 | 720 | < th | dose dependent | rect. | 12 | 8 |
| 927 | 273.37 | temperature | 15 | 720 | > th | dose independent | rect. | 13 | 2 |
| 946 | 273.47 | temperature | 15 | 30 | > th | dose independent | rect. | 3 | 23 |
| 967 | 273.64 | temperature | 20 | 90 | > th | dose dependent | rect. | 18 | 17 |
| 978 | 273.72 | humidity | 90 | 30 | < th | dose independent | rect. | 20 | 10 |