Os03g0786500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glycine-rich protein 2.
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Os03g0786500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glycine-rich protein 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 79.96 | 0.42 | 9.63 | 0.314 | 1.94 | -0.42 | -0.985 | -2.82 | -0.663 | 13.1 | -0.2413 | 5409 | -- | -- |
| 80.46 | 0.418 | 9.61 | 0.0717 | 2.01 | -0.891 | -0.788 | -- | -0.736 | 13.1 | -0.4969 | 13926 | -- | -- |
| 83.96 | 0.427 | 9.63 | 0.271 | 1.94 | -0.383 | -- | -2.86 | -0.662 | 13.1 | -0.2231 | 5409 | -- | -- |
| 82.55 | 0.423 | 9.6 | 0.154 | 1.99 | -0.922 | -- | -- | -0.731 | 13.1 | 0.3068 | 14061 | -- | -- |
| 317.94 | 0.83 | 9.69 | 0.136 | -- | -0.135 | -- | -3.86 | -0.681 | -- | 0.2618 | 5377 | -- | -- |
| 101.42 | 0.472 | 9.57 | 0.0191 | 1.96 | -- | -0.877 | -- | -0.605 | 13.1 | -- | -- | -- | -- |
| 104.59 | 0.479 | 9.57 | -0.0116 | 1.96 | -- | -- | -- | -0.609 | 13.2 | -- | -- | -- | -- |
| 319.17 | 0.832 | 9.62 | 0.318 | -- | -0.857 | -- | -- | -0.716 | -- | 1.042 | 2335 | -- | -- |
| 82.74 | 0.424 | 9.61 | -- | 1.97 | -0.915 | -- | -- | -0.794 | 13.1 | 0.2237 | 13934 | -- | -- |
| 343.75 | 0.866 | 9.6 | -0.087 | -- | -- | -- | -- | -0.649 | -- | -- | -- | -- | -- |
| 104.59 | 0.478 | 9.57 | -- | 1.97 | -- | -- | -- | -0.608 | 13.2 | -- | -- | -- | -- |
| 319.84 | 0.833 | 9.62 | -- | -- | -0.938 | -- | -- | -0.744 | -- | 0.9655 | 2335 | -- | -- |
| 343.95 | 0.866 | 9.6 | -- | -- | -- | -- | -- | -0.639 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 76.26 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 2 | 76.58 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 10 |
| 3 | 76.63 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 13 |
| 6 | 76.81 | wind | 1.0 | 43200 | < th | dose independent | rect. | 23 | 5 |
| 12 | 77.01 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 13 | 77.09 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 25 | 77.31 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 3 |
| 54 | 77.62 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 100 | 77.90 | temperature | 20.0 | 14400 | > th | dose independent | sin | 17 | NA |
| 124 | 78.11 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 128 | 78.11 | wind | 1.0 | 43200 | < th | dose dependent | sin | 10 | NA |
| 136 | 78.19 | temperature | 20.0 | 14400 | < th | dose independent | sin | 17 | NA |
| 159 | 78.33 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 15 |
| 169 | 78.43 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 19 |
| 179 | 78.48 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 17 |
| 187 | 78.53 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 188 | 78.53 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 17 |
| 190 | 78.53 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 191 | 78.53 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 17 |
| 197 | 78.57 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 14 |
| 201 | 78.57 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 14 |
| 203 | 78.58 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 14 |
| 242 | 78.73 | wind | 1.0 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 250 | 78.76 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 21 | NA |
| 253 | 78.76 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 21 | NA |
| 265 | 78.79 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 21 | NA |
| 277 | 78.83 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 14 |
| 293 | 78.85 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 23 | NA |
| 309 | 78.88 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 11 |
| 310 | 78.88 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 11 |
| 311 | 78.88 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 13 |
| 313 | 78.88 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 14 |
| 316 | 78.88 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 11 |
| 317 | 78.88 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 14 |
| 342 | 78.93 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 17 |
| 453 | 79.13 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 6 |
| 454 | 79.13 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 9 |
| 458 | 79.13 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 9 |
| 462 | 79.14 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 6 |
| 465 | 79.14 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 9 |
| 468 | 79.14 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 6 |
| 498 | 79.18 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 13 | 2 |
| 528 | 79.26 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 536 | 79.27 | humidity | 90.0 | 720 | > th | dose dependent | sin | 21 | NA |
| 574 | 79.34 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 11 |
| 583 | 79.37 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 603 | 79.40 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 609 | 79.40 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 3 |
| 644 | 79.50 | wind | 9.0 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 658 | 79.53 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 11 | 7 |
| 664 | 79.55 | wind | 9.0 | 43200 | < th | dose independent | rect. | 11 | 10 |
| 681 | 79.57 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 701 | 79.62 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 9 |
| 718 | 79.66 | wind | 9.0 | 43200 | > th | dose independent | rect. | 11 | 10 |
| 734 | 79.68 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 7 | 16 |
| 738 | 79.70 | wind | 9.0 | 43200 | < th | dose independent | rect. | 11 | 7 |
| 764 | 79.73 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 4 |
| 765 | 79.73 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 13 | 5 |
| 768 | 79.74 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 776 | 79.75 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 11 | 5 |
| 779 | 79.76 | wind | 9.0 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 782 | 79.76 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 785 | 79.76 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 14 |
| 796 | 79.80 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 800 | 79.80 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 5 |
| 808 | 79.82 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 828 | 79.86 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 10 | 20 |
| 865 | 79.93 | wind | 9.0 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 870 | 79.93 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 22 |
| 876 | 79.94 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 22 |
| 886 | 79.96 | wind | 9.0 | 43200 | < th | dose independent | rect. | 11 | 19 |
| 890 | 79.97 | wind | 9.0 | 43200 | < th | dose independent | rect. | 11 | 14 |
| 902 | 79.99 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 11 | 11 |
| 909 | 80.00 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 943 | 80.06 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 960 | 80.09 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 975 | 80.11 | wind | 9.0 | 43200 | > th | dose independent | rect. | 11 | 7 |
| 977 | 80.11 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 993 | 80.13 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |