Os03g0785900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glutathione-S-transferase.
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Os03g0785900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glutathione-S-transferase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 199.05 | 0.663 | 10.2 | -0.226 | 1.25 | -1.11 | -0.412 | 2.55 | -0.46 | 3.28 | 1.091 | 1481 | -- | -- |
| 203.15 | 0.664 | 10.2 | -0.00451 | 1.22 | -1.5 | -0.168 | -- | -0.456 | 3.33 | 0.64 | 1469 | -- | -- |
| 199.54 | 0.658 | 10.2 | -0.183 | 1.25 | -1.12 | -- | 2.38 | -0.452 | 3.26 | 1.19 | 1480 | -- | -- |
| 203.27 | 0.664 | 10.2 | 0.00958 | 1.22 | -1.49 | -- | -- | -0.452 | 3.29 | 0.6304 | 1469 | -- | -- |
| 269.32 | 0.764 | 10.2 | -0.228 | -- | -1.28 | -- | 2.4 | -0.529 | -- | 1.441 | 2795 | -- | -- |
| 225.88 | 0.705 | 10.2 | 0.339 | 1.17 | -- | -0.098 | -- | -0.234 | 3.63 | -- | -- | -- | -- |
| 225.91 | 0.704 | 10.2 | 0.34 | 1.16 | -- | -- | -- | -0.233 | 3.62 | -- | -- | -- | -- |
| 270.89 | 0.767 | 10.2 | 0.178 | -- | -1.43 | -- | -- | -0.395 | -- | 0.72 | 1371 | -- | -- |
| 203.22 | 0.664 | 10.2 | -- | 1.24 | -1.49 | -- | -- | -0.429 | 3.27 | 0.63 | 1473 | -- | -- |
| 301.31 | 0.811 | 10.2 | 0.389 | -- | -- | -- | -- | -0.202 | -- | -- | -- | -- | -- |
| 228.96 | 0.708 | 10.2 | -- | 1.17 | -- | -- | -- | -0.271 | 3.62 | -- | -- | -- | -- |
| 270.14 | 0.765 | 10.2 | -- | -- | -1.61 | -- | -- | -0.4 | -- | 0.63 | 1373 | -- | -- |
| 305.31 | 0.816 | 10.2 | -- | -- | -- | -- | -- | -0.245 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 197.18 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 20 |
| 2 | 197.20 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 5 | 197.47 | radiation | 1 | 1440 | < th | dose dependent | rect. | 6 | 9 |
| 13 | 198.28 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 14 | 198.28 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 31 | 199.08 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 16 |
| 37 | 199.12 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 21 |
| 43 | 199.17 | radiation | 1 | 1440 | > th | dose independent | rect. | 6 | 10 |
| 45 | 199.17 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 20 |
| 53 | 199.23 | radiation | 1 | 1440 | < th | dose independent | rect. | 6 | 10 |
| 68 | 199.43 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 69 | 199.43 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 77 | 199.57 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 98 | 199.79 | radiation | 1 | 1440 | < th | dose independent | rect. | 24 | 16 |
| 101 | 199.82 | radiation | 1 | 1440 | < th | dose independent | sin | 0 | NA |
| 107 | 199.85 | radiation | 1 | 1440 | > th | dose independent | sin | 0 | NA |
| 190 | 200.28 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 191 | 200.29 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 16 |
| 225 | 200.35 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 239 | 200.36 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 287 | 200.36 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 318 | 200.53 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 320 | 200.57 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 321 | 200.57 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 15 |
| 326 | 200.60 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 342 | 200.64 | radiation | 1 | 1440 | < th | dose dependent | sin | 1 | NA |
| 400 | 200.91 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 404 | 200.95 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 409 | 201.00 | humidity | 90 | 1440 | > th | dose dependent | rect. | 21 | 3 |
| 516 | 201.58 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 517 | 201.59 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 16 |
| 555 | 201.66 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 566 | 201.67 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 611 | 201.94 | radiation | 1 | 1440 | > th | dose independent | sin | 14 | NA |
| 617 | 201.96 | radiation | 1 | 1440 | < th | dose independent | rect. | 14 | 23 |
| 621 | 201.97 | radiation | 1 | 1440 | < th | dose independent | sin | 14 | NA |
| 657 | 202.16 | humidity | 80 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 697 | 202.41 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 5 | 18 |
| 768 | 202.64 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 5 | 18 |
| 788 | 202.87 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 9 | 6 |
| 837 | 203.11 | humidity | 90 | 1440 | > th | dose independent | rect. | 21 | 2 |
| 867 | 203.40 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 14 |
| 880 | 203.56 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 4 | 16 |
| 881 | 203.57 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 8 | 8 |
| 890 | 203.73 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 4 | 16 |
| 901 | 203.95 | humidity | 80 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 919 | 204.12 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 7 | 16 |
| 986 | 204.44 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 7 | 16 |
| 993 | 204.49 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 10 | 8 |