Os03g0784700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ferredoxin--NADP reductase, root isozyme, chloroplast precursor (EC 1.18.1.2) (FNR).
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Os03g0784700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ferredoxin--NADP reductase, root isozyme, chloroplast precursor (EC 1.18.1.2) (FNR).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.42 | 0.317 | 10.6 | -0.477 | 0.441 | -0.116 | 0.545 | 1.93 | -0.137 | 12.9 | 1009 | 11694 | -- | -- |
| 55.56 | 0.347 | 10.5 | 0.0412 | 0.437 | -0.293 | 0.613 | -- | -0.0018 | 13.3 | 1005 | 41621 | -- | -- |
| 46.66 | 0.318 | 10.6 | -0.453 | 0.442 | -0.105 | -- | 1.9 | -0.129 | 13 | 1009 | 11751 | -- | -- |
| 56.41 | 0.35 | 10.5 | 0.0442 | 0.471 | -0.33 | -- | -- | -0.0187 | 13.1 | 1004 | 41667 | -- | -- |
| 56.19 | 0.349 | 10.7 | -0.737 | -- | -0.235 | -- | 3.34 | -0.217 | -- | 1005 | 26616 | -- | -- |
| 57.42 | 0.355 | 10.5 | 0.254 | 0.451 | -- | 0.505 | -- | 0.0631 | 12.9 | -- | -- | -- | -- |
| 58.48 | 0.358 | 10.5 | 0.272 | 0.451 | -- | -- | -- | 0.0659 | 13 | -- | -- | -- | -- |
| 69.43 | 0.388 | 10.5 | 0.0704 | -- | -0.273 | -- | -- | -0.00657 | -- | 1002 | 41733 | -- | -- |
| 56.43 | 0.35 | 10.5 | -- | 0.449 | -0.354 | -- | -- | -0.0236 | 13 | 1004 | 41729 | -- | -- |
| 71.1 | 0.394 | 10.5 | 0.255 | -- | -- | -- | -- | 0.0572 | -- | -- | -- | -- | -- |
| 60.43 | 0.364 | 10.5 | -- | 0.446 | -- | -- | -- | 0.0356 | 13 | -- | -- | -- | -- |
| 69.45 | 0.388 | 10.5 | -- | -- | -0.327 | -- | -- | -0.0166 | -- | 1002 | 41844 | -- | -- |
| 72.82 | 0.398 | 10.5 | -- | -- | -- | -- | -- | 0.0289 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.10 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 2 | 39.81 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 5 |
| 3 | 40.10 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 7 | 40.42 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 5 |
| 8 | 40.50 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 7 |
| 10 | 40.68 | wind | 1 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 11 | 40.70 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 12 | 40.77 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 17 |
| 15 | 40.92 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 18 | 41.03 | wind | 1 | 43200 | < th | dose dependent | sin | 16 | NA |
| 20 | 41.13 | radiation | 40 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 21 | 41.15 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 22 | 41.20 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 20 |
| 23 | 41.21 | wind | 1 | 43200 | < th | dose dependent | rect. | 16 | 10 |
| 25 | 41.31 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 30 | 41.35 | wind | 1 | 43200 | < th | dose dependent | rect. | 13 | 13 |
| 36 | 41.42 | humidity | 80 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 64 | 41.55 | radiation | 40 | 43200 | > th | dose independent | sin | 5 | NA |
| 89 | 41.60 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 100 | 41.62 | humidity | 80 | 43200 | < th | dose independent | rect. | 19 | 12 |
| 102 | 41.62 | humidity | 80 | 43200 | > th | dose independent | rect. | 19 | 13 |
| 138 | 41.68 | radiation | 40 | 43200 | > th | dose independent | no | NA | NA |
| 299 | 41.71 | humidity | 80 | 43200 | < th | dose dependent | rect. | 19 | 11 |
| 325 | 41.75 | humidity | 80 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 327 | 41.75 | humidity | 90 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 328 | 41.75 | radiation | 20 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 370 | 41.80 | radiation | 40 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 392 | 41.89 | humidity | 80 | 43200 | < th | dose independent | sin | 10 | NA |
| 395 | 41.90 | radiation | 10 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 480 | 42.01 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 5 |
| 495 | 42.05 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 496 | 42.05 | radiation | 40 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 506 | 42.07 | radiation | 20 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 529 | 42.09 | radiation | 40 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 687 | 42.19 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 933 | 42.26 | wind | 3 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 981 | 42.29 | radiation | 20 | 43200 | > th | dose dependent | sin | 3 | NA |