Os03g0783800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF295 family protein.
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Os03g0783800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF295 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.84 | 0.297 | 9.02 | 2.31 | 0.791 | -1.32 | 0.705 | -3.21 | 0.364 | 5.94 | 0.9112 | 4370 | -- | -- |
| 48.55 | 0.325 | 9.09 | 2.06 | 0.855 | -0.684 | 1.2 | -- | 0.283 | 6.17 | 3.665 | 5813 | -- | -- |
| 40.97 | 0.298 | 9.02 | 2.32 | 0.794 | -1.34 | -- | -3.31 | 0.365 | 5.74 | 0.8993 | 4380 | -- | -- |
| 44.66 | 0.311 | 9.13 | 1.87 | 1.41 | -1.43 | -- | -- | 0.233 | 5.05 | 2.762 | 3365 | -- | -- |
| 73.47 | 0.399 | 9.03 | 2.37 | -- | -1.36 | -- | -3.4 | 0.382 | -- | 0.886 | 4355 | -- | -- |
| 57.21 | 0.355 | 9.06 | 1.98 | 0.802 | -- | 0.812 | -- | 0.421 | 6.29 | -- | -- | -- | -- |
| 58.77 | 0.359 | 9.06 | 1.99 | 0.807 | -- | -- | -- | 0.418 | 6.14 | -- | -- | -- | -- |
| 75.72 | 0.405 | 9.1 | 1.92 | -- | -1.02 | -- | -- | 0.303 | -- | 2.566 | 2894 | -- | -- |
| 69.33 | 0.388 | 9.08 | -- | 0.791 | -1.41 | -- | -- | 0.232 | 6.24 | 0.009593 | 47520 | -- | -- |
| 92.51 | 0.449 | 9.07 | 2.02 | -- | -- | -- | -- | 0.436 | -- | -- | -- | -- | -- |
| 163.43 | 0.598 | 9.11 | -- | 0.836 | -- | -- | -- | 0.196 | 6.01 | -- | -- | -- | -- |
| 85.81 | 0.431 | 9.23 | -- | -- | -1.66 | -- | -- | -0.246 | -- | 0.004085 | 47520 | -- | -- |
| 199.66 | 0.66 | 9.13 | -- | -- | -- | -- | -- | 0.213 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.15 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 2 | 40.21 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 4 | 40.37 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 5 | 40.38 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 13 | 40.51 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 17 | 40.56 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 20 | 40.56 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 19 |
| 30 | 40.57 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 20 | 9 |
| 53 | 40.61 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 12 |
| 74 | 40.63 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 75 | 40.63 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 91 | 40.65 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 98 | 40.66 | radiation | 1.0 | 14400 | < th | dose dependent | sin | 20 | NA |
| 106 | 40.67 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 121 | 40.68 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 23 |
| 122 | 40.69 | radiation | 1.0 | 4320 | > th | dose independent | sin | 22 | NA |
| 126 | 40.69 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 23 |
| 132 | 40.70 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 156 | 40.73 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 164 | 40.75 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 171 | 40.76 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 201 | 40.80 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 23 |
| 281 | 40.90 | radiation | 1.0 | 4320 | < th | dose independent | sin | 23 | NA |
| 283 | 40.90 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 357 | 40.98 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 6 | 13 |
| 371 | 40.99 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 379 | 41.00 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 9 | 23 |
| 393 | 41.01 | radiation | 1.0 | 4320 | < th | dose dependent | no | NA | NA |
| 394 | 41.01 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 2 | 19 |
| 395 | 41.01 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 24 | 19 |
| 401 | 41.01 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 11 | 21 |
| 413 | 41.01 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 20 | 23 |
| 421 | 41.02 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 3 | 16 |
| 518 | 41.06 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 11 | 8 |
| 553 | 41.07 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 9 | 10 |
| 581 | 41.07 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 18 | 10 |
| 630 | 41.09 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 631 | 41.09 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 10 | 8 |
| 648 | 41.12 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 11 | 21 |
| 683 | 41.14 | radiation | 1.0 | 4320 | > th | dose independent | no | NA | NA |
| 739 | 41.14 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 774 | 41.15 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 785 | 41.16 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 14 | 13 |
| 803 | 41.18 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 828 | 41.20 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 831 | 41.20 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 832 | 41.20 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 22 | 2 |
| 853 | 41.21 | humidity | 90.0 | 43200 | > th | dose dependent | sin | 16 | NA |
| 854 | 41.21 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 872 | 41.23 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 873 | 41.23 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 875 | 41.23 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 6 | 21 |
| 893 | 41.24 | radiation | 1.0 | 4320 | < th | dose independent | no | NA | NA |
| 898 | 41.24 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 5 | 16 |
| 899 | 41.24 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 2 | 19 |
| 900 | 41.24 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 6 | 19 |
| 901 | 41.24 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 24 | 19 |
| 909 | 41.24 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 11 | 21 |
| 949 | 41.25 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 6 | 13 |
| 959 | 41.25 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 2 | 17 |