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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0782300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.81 (0.0732) R2 : 0.621
β1 : -0.525 (0.381) R2dD : 0.00432 R2D : 0.0232
β2 : 3.17 (0.195) R2dC : 0.327 R2C : 0.052
β3 : -3.14 (0.264) R2dE : 0.217 R2E : -0.105
β4 : -9.69 (0.709) R2dD*C : 0.174 R2D*C : 0.121
β5 : 11.3 (1.3) R2dD*E : 0.168 R2D*E : 0.139
γ1 : 0.741 (0.173) R2dN8 : 0.033 R2N8 : -0.0466
σ : 1.2
deviance : 656.8
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_____
C
peak time of C : 8.48
E
wheather : temperature
threshold : 20.72
memory length : 399
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 2.15
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
656.8 1.2 3.81 -0.525 3.17 -3.14 -9.69 11.3 0.741 8.48 20.72 399 2.15 --
753.73 1.28 4.05 -3 3.96 -3.72 -8.25 -- -0.0276 8.04 15.33 521 3.2 --
909.49 1.4 3.86 -1.29 2.84 -3.14 -- 8.55 0.639 9.25 21.7 532 2.36 --
943.27 1.43 4.04 -3.14 4.3 -4.08 -- -- 0.0115 8.53 14.89 518 2.48 --
1139.1 1.57 3.99 -1.02 -- -2.44 -- 9.23 0.273 -- 23.99 1079 1.49 --
906.82 1.41 4.25 -3.64 1.93 -- -8.09 -- -0.618 8.54 -- -- -- --
1102.94 1.56 4.25 -3.87 1.96 -- -- -- -0.605 9.54 -- -- -- --
1180.47 1.6 4.17 -3.15 -- -3.07 -- -- -0.00793 -- -2.205 1335 8.02e-07 --
1174.06 1.6 3.9 -- 5.13 -5.65 -- -- 0.548 8.79 14.26 581 2.48 --
1330.53 1.7 4.3 -3.88 -- -- -- -- -0.6 -- -- -- -- --
1497.6 1.81 4.15 -- 1.97 -- -- -- -0.174 9.69 -- -- -- --
1180.49 1.6 3.96 -- -- -4.04 -- -- 0.957 -- -14.42 21514 0.853 --
1728.44 1.94 4.2 -- -- -- -- -- -0.169 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 679.17 temperature 20 720 > th dose dependent rect. 23 5
4 685.12 temperature 20 270 > th dose dependent sin 8 NA
5 685.51 temperature 20 720 > th dose dependent sin 10 NA
15 691.99 temperature 20 720 > th dose dependent rect. 19 14
39 703.05 temperature 30 270 < th dose dependent rect. 23 11
44 704.31 humidity 90 43200 < th dose independent rect. 19 1
50 707.06 temperature 30 270 < th dose dependent sin 7 NA
53 708.03 temperature 20 270 > th dose dependent rect. 23 12
58 709.42 humidity 80 43200 < th dose independent rect. 14 4
62 710.24 radiation 1 43200 < th dose dependent rect. 19 10
63 710.27 temperature 25 270 < th dose independent sin 6 NA
64 710.36 radiation 1 43200 < th dose dependent rect. 21 8
66 710.37 radiation 1 43200 < th dose dependent rect. 23 6
71 710.69 radiation 1 43200 < th dose dependent rect. 1 4
77 711.02 radiation 1 43200 < th dose dependent rect. 4 1
78 711.10 temperature 10 270 > th dose dependent sin 8 NA
80 711.13 humidity 90 43200 > th dose independent rect. 20 1
81 711.17 humidity 80 43200 < th dose independent rect. 16 1
86 712.06 humidity 80 43200 > th dose dependent rect. 18 1
92 713.66 humidity 90 43200 < th dose independent rect. 19 5
93 713.69 atmosphere 1005 43200 > th dose independent rect. 12 3
94 713.80 atmosphere 1010 43200 > th dose independent rect. 1 1
95 713.82 humidity 90 43200 < th dose independent rect. 22 2
98 713.89 atmosphere 1005 43200 > th dose independent rect. 13 1
105 714.29 atmosphere 1010 43200 < th dose independent rect. 1 1
111 714.38 humidity 80 43200 > th dose independent rect. 14 4
113 714.51 atmosphere 1005 43200 < th dose independent rect. 12 5
121 714.62 atmosphere 1005 43200 > th dose independent rect. 12 5
135 715.06 atmosphere 1005 43200 < th dose independent rect. 12 3
146 715.43 radiation 30 43200 < th dose independent rect. 16 6
149 715.47 radiation 30 43200 < th dose independent rect. 16 4
150 715.47 radiation 30 43200 < th dose independent rect. 16 8
160 715.58 radiation 30 43200 < th dose independent rect. 16 1
161 715.58 humidity 60 43200 > th dose independent rect. 15 2
168 715.72 radiation 20 43200 > th dose dependent rect. 17 14
176 715.90 atmosphere 1005 43200 > th dose independent rect. 12 10
178 715.93 humidity 80 43200 > th dose dependent rect. 10 1
193 716.22 atmosphere 1005 43200 < th dose independent rect. 16 1
198 716.26 radiation 20 43200 > th dose dependent rect. 6 1
215 716.34 atmosphere 1010 43200 > th dose independent rect. 19 8
227 716.44 atmosphere 1005 43200 < th dose independent rect. 12 10
229 716.45 humidity 80 43200 > th dose independent rect. 10 9
243 716.57 radiation 1 43200 < th dose independent rect. 18 6
244 716.60 radiation 1 43200 > th dose dependent rect. 18 11
247 716.62 radiation 1 43200 < th dose independent rect. 18 4
258 716.71 radiation 1 43200 < th dose independent rect. 18 2
272 716.80 radiation 1 43200 > th dose dependent rect. 18 1
288 716.86 humidity 60 43200 < th dose independent rect. 16 1
302 716.93 radiation 1 43200 < th dose dependent rect. 18 6
303 716.94 atmosphere 1010 43200 > th dose independent rect. 19 1
309 716.98 radiation 1 43200 < th dose dependent rect. 18 8
310 716.99 radiation 1 43200 < th dose dependent rect. 18 4
314 717.01 atmosphere 1005 43200 > th dose independent rect. 16 1
320 717.05 radiation 1 43200 < th dose dependent rect. 18 2
322 717.07 atmosphere 1010 43200 < th dose independent rect. 19 8
331 717.12 radiation 30 43200 < th dose independent rect. 16 15
372 717.53 atmosphere 1010 43200 < th dose independent rect. 19 1
376 717.55 atmosphere 1005 43200 > th dose independent sin 19 NA
392 717.66 radiation 10 43200 > th dose independent rect. 5 1
412 717.71 temperature 30 720 < th dose dependent rect. 21 8
434 717.90 radiation 10 43200 < th dose independent rect. 17 13
487 718.30 temperature 25 4320 < th dose independent rect. 23 14
500 718.37 wind 9 43200 > th dose independent rect. 16 1
521 718.50 temperature 25 4320 < th dose independent rect. 22 16
541 718.65 atmosphere 1010 43200 > th dose independent sin 13 NA
552 718.72 atmosphere 1005 43200 < th dose independent sin 19 NA
582 718.93 atmosphere 1010 43200 < th dose independent sin 14 NA
584 718.94 radiation 10 43200 < th dose independent rect. 5 1
589 718.96 temperature 25 4320 > th dose independent rect. 22 16
651 719.31 radiation 10 43200 < th dose independent rect. 3 3
710 719.59 humidity 80 43200 > th dose independent rect. 10 1
716 719.61 atmosphere 1010 43200 < th dose independent rect. 11 16
823 719.99 radiation 1 43200 < th dose independent rect. 7 4
832 720.02 radiation 1 43200 > th dose independent rect. 7 1
843 720.05 humidity 90 43200 < th dose independent rect. 9 16
847 720.06 radiation 1 14400 < th dose dependent rect. 18 20
852 720.09 radiation 1 43200 > th dose independent rect. 7 4
866 720.13 radiation 1 14400 < th dose dependent rect. 18 18
867 720.14 humidity 80 43200 < th dose independent rect. 12 2
871 720.15 humidity 90 43200 > th dose independent rect. 19 6
880 720.20 radiation 1 43200 < th dose independent rect. 7 1
906 720.31 atmosphere 1010 43200 > th dose independent rect. 17 19
913 720.34 radiation 1 43200 < th dose dependent rect. 7 4
917 720.36 humidity 90 43200 > th dose independent rect. 22 1
973 720.48 temperature 30 720 < th dose dependent rect. 21 10
979 720.50 humidity 90 43200 < th dose independent rect. 6 20