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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0782200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.87 (0.147) R2 : 0.772
β1 : -15.6 (0.61) R2dD : 0.532 R2D : 0.324
β2 : 5.36 (0.339) R2dC : 0.139 R2C : 0.172
β3 : 9.8 (1.11) R2dE : 0.122 R2E : 0.0616
β4 : -7.51 (1.38) R2dD*C : 0.0178 R2D*C : 0.00636
β5 : -14.2 (7.34) R2dD*E : 0.00688 R2D*E : -0.0879
γ1 : -3.7 (0.289) R2dN8 : 0.114 R2N8 : 0.0423
σ : 2.51
deviance : 2855.95
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_____
C
peak time of C : 10
E
wheather : wind
threshold : 1.312
memory length : 586
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.18
open length of G : 0.27

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
2855.95 2.51 8.87 -15.6 5.36 9.8 -7.51 -14.2 -3.7 10 1.312 586 4.18 0.27
2877.01 2.5 8.74 -15.1 5.2 8.67 -8.77 -- -3.6 10.2 1.318 584 4.2 0.259
3065.01 2.58 8.91 -15.8 5.48 9.05 -- -14.2 -3.8 9.88 1.342 584 4.17 0.283
3149.02 2.61 8.77 -15.2 5.52 7.63 -- -- -3.84 9.83 1.32 583 4.2 0.25
3840.11 2.89 9.02 -15.6 -- 7.59 -- -12.4 -3.83 -- 3.971 581 4.23 0.45
3698.31 2.85 8.85 -14.1 6.76 -- -5.9 -- -4.35 9.44 -- -- -- --
3822.84 2.9 8.85 -14.3 6.8 -- -- -- -4.36 9.31 -- -- -- --
3742.36 2.85 8.81 -14.7 -- 6.9 -- -- -3.83 -- 4.753 582 4.19 0.382
9044.81 4.43 8.65 -- 5.97 7.02 -- -- -2.61 9.47 1.1 695 4.05 0.267
6522.79 3.77 9.04 -14.3 -- -- -- -- -4.33 -- -- -- -- --
9207.19 4.49 8.49 -- 6.81 -- -- -- -2.77 9.47 -- -- -- --
9307.83 4.49 8.7 -- -- 6.5 -- -- -2.46 -- 11.79 647 4.17 0.0663
11935.84 5.1 8.68 -- -- -- -- -- -2.74 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 3115.12 wind 1 720 < th dose independent rect. 4 1
3 3137.86 wind 1 720 < th dose dependent rect. 4 1
5 3156.34 temperature 20 270 > th dose dependent rect. 1 8
14 3218.34 temperature 30 1440 > th dose dependent rect. 18 1
28 3220.99 wind 1 90 < th dose dependent rect. 4 7
31 3222.50 wind 1 90 < th dose dependent rect. 4 5
32 3223.19 wind 1 90 < th dose dependent rect. 4 9
62 3247.88 wind 1 90 < th dose dependent rect. 4 13
68 3252.23 wind 1 90 < th dose dependent rect. 4 19
74 3257.40 wind 1 90 < th dose independent rect. 4 6
76 3259.95 temperature 25 720 > th dose dependent rect. 22 1
109 3271.11 humidity 50 1440 < th dose independent rect. 16 1
111 3272.90 humidity 50 1440 < th dose dependent rect. 16 1
112 3273.31 humidity 70 1440 > th dose independent rect. 19 1
117 3276.18 humidity 70 1440 > th dose independent rect. 19 10
120 3277.36 humidity 70 1440 > th dose independent rect. 19 12
126 3278.14 humidity 50 1440 > th dose independent rect. 16 1
127 3278.22 radiation 1 43200 < th dose dependent rect. 19 7
130 3279.10 wind 7 43200 > th dose dependent rect. 17 5
132 3279.63 wind 5 43200 > th dose dependent rect. 15 18
134 3280.34 wind 9 43200 > th dose dependent sin 14 NA
141 3284.63 wind 7 43200 > th dose dependent rect. 17 7
146 3286.58 wind 9 43200 > th dose independent sin 13 NA
147 3286.58 wind 9 43200 > th dose independent rect. 17 10
152 3287.42 wind 9 43200 > th dose independent rect. 17 7
154 3287.85 wind 9 43200 > th dose dependent rect. 15 16
155 3287.86 wind 5 43200 < th dose independent rect. 15 18
156 3288.01 wind 7 43200 > th dose dependent rect. 17 10
159 3288.46 wind 5 43200 > th dose dependent sin 13 NA
160 3288.82 wind 9 43200 < th dose independent rect. 17 8
165 3288.97 wind 9 43200 < th dose independent rect. 17 5
167 3289.02 temperature 20 90 > th dose dependent rect. 4 1
168 3289.05 wind 9 43200 > th dose independent rect. 17 5
171 3289.23 wind 5 43200 < th dose independent rect. 16 16
174 3289.73 wind 5 43200 > th dose independent rect. 15 18
176 3290.19 wind 9 43200 < th dose independent rect. 17 13
180 3290.91 wind 9 43200 > th dose dependent rect. 15 12
184 3291.36 wind 9 43200 < th dose independent sin 13 NA
188 3291.66 humidity 80 43200 > th dose independent rect. 22 1
189 3291.77 wind 9 43200 > th dose dependent rect. 15 10
213 3293.34 wind 7 43200 < th dose independent rect. 19 2
254 3297.46 wind 5 43200 < th dose independent sin 13 NA
265 3298.20 wind 9 43200 > th dose dependent rect. 20 2
270 3298.56 humidity 80 43200 < th dose independent rect. 22 1
293 3299.84 temperature 30 1440 > th dose independent rect. 18 1
356 3303.15 temperature 20 90 > th dose independent rect. 4 1
388 3306.01 temperature 30 1440 < th dose independent rect. 18 6
400 3306.69 humidity 70 1440 < th dose independent rect. 19 1
423 3307.33 temperature 30 1440 < th dose independent rect. 18 4
460 3308.95 temperature 30 1440 < th dose independent rect. 18 8
480 3310.50 atmosphere 1000 43200 < th dose independent rect. 11 1
486 3310.87 atmosphere 1000 43200 > th dose independent rect. 11 1
528 3313.53 wind 5 43200 > th dose dependent rect. 19 2
618 3317.81 humidity 70 1440 < th dose dependent rect. 19 12
627 3318.22 humidity 70 1440 < th dose dependent rect. 19 1
645 3318.34 wind 3 43200 > th dose dependent rect. 20 23
654 3318.79 temperature 20 10 > th dose dependent rect. 3 7
670 3319.18 wind 3 43200 > th dose dependent rect. 17 23
727 3321.44 wind 3 43200 > th dose dependent no NA NA
735 3321.73 wind 3 43200 > th dose dependent rect. 24 23
781 3323.16 humidity 90 90 > th dose dependent rect. 4 1
811 3324.31 wind 3 43200 > th dose dependent rect. 6 23
815 3324.53 wind 1 90 < th dose independent rect. 4 19
866 3326.15 wind 1 30 < th dose independent rect. 24 8
867 3326.17 wind 5 43200 < th dose independent rect. 1 23
870 3326.22 wind 1 90 < th dose independent rect. 4 13
891 3326.99 wind 5 43200 < th dose independent no NA NA
893 3327.01 wind 5 43200 < th dose independent rect. 6 23
918 3327.65 wind 5 43200 > th dose independent rect. 1 23
947 3328.41 wind 5 43200 < th dose independent rect. 4 23
951 3328.50 wind 5 43200 < th dose independent rect. 21 23
956 3328.55 wind 5 43200 > th dose independent rect. 6 23
988 3329.15 wind 5 43200 > th dose independent no NA NA
990 3329.19 wind 9 43200 < th dose dependent rect. 17 17