Os03g0779300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os03g0779300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.08 | 0.332 | 9.93 | -0.325 | 0.236 | -0.944 | 0.164 | -0.766 | -0.0716 | 8.56 | 17.41 | 141 | -- | -- |
| 50.56 | 0.331 | 9.91 | -0.22 | 0.234 | -0.869 | 0.133 | -- | -0.0615 | 8.35 | 18.5 | 126 | -- | -- |
| 50.13 | 0.33 | 9.92 | -0.311 | 0.234 | -0.903 | -- | -0.636 | -0.0678 | 8.58 | 18.5 | 141 | -- | -- |
| 50.49 | 0.331 | 9.91 | -0.201 | 0.237 | -0.927 | -- | -- | -0.0356 | 8.66 | 18.73 | 136 | -- | -- |
| 51.78 | 0.335 | 9.93 | -0.32 | -- | -0.938 | -- | -0.751 | -0.0607 | -- | 18.6 | 283 | -- | -- |
| 62.55 | 0.371 | 9.94 | -0.416 | 0.449 | -- | 0.484 | -- | -0.188 | 5.59 | -- | -- | -- | -- |
| 63.13 | 0.372 | 9.94 | -0.414 | 0.452 | -- | -- | -- | -0.19 | 5.61 | -- | -- | -- | -- |
| 52.23 | 0.337 | 9.91 | -0.184 | -- | -0.963 | -- | -- | -0.0222 | -- | 18.95 | 281 | -- | -- |
| 51.46 | 0.334 | 9.9 | -- | 0.228 | -1.01 | -- | -- | -0.00263 | 9.13 | 18.5 | 141 | -- | -- |
| 73.75 | 0.401 | 9.95 | -0.399 | -- | -- | -- | -- | -0.179 | -- | -- | -- | -- | -- |
| 67.65 | 0.385 | 9.93 | -- | 0.446 | -- | -- | -- | -0.144 | 5.65 | -- | -- | -- | -- |
| 53.05 | 0.339 | 9.91 | -- | -- | -1.02 | -- | -- | 0.00445 | -- | 18.7 | 281 | -- | -- |
| 77.96 | 0.412 | 9.94 | -- | -- | -- | -- | -- | -0.135 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.99 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 3 | 50.07 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 8 | 50.15 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 31 | 50.55 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 35 | 50.63 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 45 | 50.69 | temperature | 25 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 51 | 50.72 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 52 | 50.72 | temperature | 25 | 1440 | < th | dose dependent | rect. | 6 | 5 |
| 60 | 50.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 71 | 50.83 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 114 | 50.97 | temperature | 30 | 270 | < th | dose dependent | rect. | 18 | 23 |
| 120 | 51.00 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 156 | 51.13 | temperature | 25 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 164 | 51.16 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 3 |
| 189 | 51.20 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 197 | 51.22 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 205 | 51.25 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 3 |
| 228 | 51.30 | temperature | 25 | 1440 | > th | dose independent | rect. | 5 | 6 |
| 241 | 51.31 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 23 |
| 263 | 51.36 | temperature | 25 | 1440 | < th | dose independent | rect. | 5 | 6 |
| 294 | 51.42 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 385 | 51.62 | temperature | 25 | 1440 | < th | dose independent | rect. | 2 | 9 |
| 480 | 51.78 | temperature | 30 | 1440 | < th | dose dependent | sin | 6 | NA |
| 503 | 51.82 | temperature | 25 | 1440 | < th | dose independent | rect. | 23 | 13 |
| 542 | 51.91 | temperature | 25 | 1440 | > th | dose independent | rect. | 23 | 13 |
| 543 | 51.91 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 22 |
| 571 | 51.94 | temperature | 10 | 1440 | > th | dose dependent | sin | 7 | NA |
| 592 | 51.96 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 686 | 52.13 | temperature | 25 | 1440 | < th | dose independent | sin | 6 | NA |
| 726 | 52.17 | temperature | 25 | 1440 | > th | dose independent | sin | 6 | NA |
| 757 | 52.21 | temperature | 20 | 270 | > th | dose dependent | sin | 2 | NA |
| 790 | 52.26 | temperature | 25 | 720 | > th | dose independent | rect. | 22 | 20 |
| 803 | 52.28 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 830 | 52.32 | wind | 1 | 14400 | > th | dose independent | rect. | 20 | 3 |
| 906 | 52.41 | temperature | 25 | 720 | < th | dose independent | rect. | 21 | 18 |
| 935 | 52.45 | temperature | 25 | 720 | < th | dose independent | rect. | 22 | 20 |