Os03g0777700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : FAR1 domain containing protein.
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Os03g0777700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : FAR1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.56 | 0.31 | 10 | -0.164 | 0.316 | 1.04 | 0.644 | 0.958 | 0.133 | 0.844 | 0.17 | 4352 | -- | -- |
| 44.67 | 0.311 | 10 | 0.0571 | 0.274 | 0.987 | 0.694 | -- | 0.169 | 0.434 | 0.1451 | 4394 | -- | -- |
| 44.96 | 0.312 | 10 | -0.164 | 0.241 | 1.06 | -- | 0.985 | 0.138 | 1.34 | 0.17 | 4407 | -- | -- |
| 45.91 | 0.316 | 10 | -0.0566 | 0.276 | 0.846 | -- | -- | 0.14 | 1.78 | 0.1642 | 4387 | -- | -- |
| 45.39 | 0.314 | 10 | -0.14 | -- | 1.21 | -- | 0.985 | 0.141 | -- | 0.17 | 4572 | -- | -- |
| 56.9 | 0.354 | 10 | -0.336 | 0.337 | -- | 0.633 | -- | 0.0187 | 0.71 | -- | -- | -- | -- |
| 58.5 | 0.358 | 10 | -0.36 | 0.34 | -- | -- | -- | 0.0145 | 1.23 | -- | -- | -- | -- |
| 47 | 0.319 | 10 | -0.0775 | -- | 0.986 | -- | -- | 0.133 | -- | 0.169 | 4613 | -- | -- |
| 45.93 | 0.316 | 10 | -- | 0.275 | 0.853 | -- | -- | 0.14 | 1.39 | 0.1699 | 4384 | -- | -- |
| 65.63 | 0.379 | 10 | -0.347 | -- | -- | -- | -- | 0.0215 | -- | -- | -- | -- | -- |
| 61.92 | 0.368 | 10 | -- | 0.334 | -- | -- | -- | 0.0547 | 1.18 | -- | -- | -- | -- |
| 46.97 | 0.319 | 10 | -- | -- | 1.02 | -- | -- | 0.153 | -- | 0.1643 | 4598 | -- | -- |
| 68.81 | 0.387 | 10 | -- | -- | -- | -- | -- | 0.06 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.53 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 2 | 39.76 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 3 | 39.98 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 3 | 2 |
| 6 | 40.04 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 10 | 40.22 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 14 | 40.30 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 12 | 6 |
| 27 | 40.44 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 12 | 6 |
| 130 | 40.82 | atmosphere | 1005.0 | 14400 | > th | dose dependent | sin | 4 | NA |
| 158 | 40.89 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 169 | 40.91 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 229 | 41.03 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 258 | 41.08 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 283 | 41.12 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 312 | 41.15 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 331 | 41.17 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 335 | 41.18 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 382 | 41.22 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 1 | 14 |
| 383 | 41.22 | atmosphere | 1005.0 | 14400 | > th | dose dependent | no | NA | NA |
| 427 | 41.26 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 22 | 19 |
| 443 | 41.27 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 470 | 41.29 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 3 | 6 |
| 485 | 41.30 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 17 | 18 |
| 486 | 41.30 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 9 | 20 |
| 497 | 41.31 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 507 | 41.32 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 522 | 41.33 | atmosphere | 1005.0 | 43200 | > th | dose independent | sin | 12 | NA |
| 527 | 41.33 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 539 | 41.34 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 9 | 21 |
| 548 | 41.35 | atmosphere | 1005.0 | 43200 | < th | dose independent | sin | 12 | NA |
| 550 | 41.35 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 558 | 41.35 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 22 | 19 |
| 560 | 41.35 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 16 | 22 |
| 598 | 41.37 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 1 | 16 |
| 630 | 41.38 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 18 | 23 |
| 668 | 41.40 | atmosphere | 1005.0 | 43200 | > th | dose independent | sin | 4 | NA |
| 679 | 41.40 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 16 | 22 |
| 681 | 41.40 | temperature | 15.0 | 43200 | < th | dose dependent | sin | 4 | NA |
| 735 | 41.43 | atmosphere | 1005.0 | 43200 | > th | dose independent | no | NA | NA |
| 743 | 41.43 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 1 | 22 |
| 751 | 41.43 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 1 | 23 |
| 767 | 41.44 | atmosphere | 1005.0 | 43200 | < th | dose independent | no | NA | NA |
| 791 | 41.44 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 827 | 41.45 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 836 | 41.46 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 872 | 41.47 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 897 | 41.47 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 905 | 41.48 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 972 | 41.50 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 976 | 41.50 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 16 | 18 |