Os03g0777600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0777600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.97 | 0.266 | 10.2 | 0.00255 | 1.24 | 0.856 | 0.524 | -0.515 | 0.0857 | 20.5 | 49 | 1076 | -- | -- |
| 32.27 | 0.265 | 10.2 | -0.0483 | 1.24 | 0.812 | 0.618 | -- | 0.0824 | 20.5 | 52 | 1075 | -- | -- |
| 32.74 | 0.266 | 10.2 | 0.00283 | 1.24 | 0.861 | -- | -0.752 | 0.0878 | 20.5 | 49.93 | 1069 | -- | -- |
| 33.54 | 0.27 | 10.2 | -0.0675 | 1.2 | 0.759 | -- | -- | 0.0802 | 20.4 | 52.68 | 1113 | -- | -- |
| 102.98 | 0.473 | 10.2 | -0.0946 | -- | 0.513 | -- | 0.0753 | 0.0775 | -- | 46.29 | 2863 | -- | -- |
| 43.34 | 0.309 | 10.2 | -0.0914 | 1.09 | -- | 0.51 | -- | 0.0509 | 19.9 | -- | -- | -- | -- |
| 44.1 | 0.311 | 10.2 | -0.105 | 1.09 | -- | -- | -- | 0.0516 | 19.9 | -- | -- | -- | -- |
| 102.89 | 0.472 | 10.2 | -0.119 | -- | 0.534 | -- | -- | 0.0892 | -- | 48.01 | 2861 | -- | -- |
| 33.65 | 0.27 | 10.2 | -- | 1.2 | 0.775 | -- | -- | 0.0859 | 20.4 | 52 | 1113 | -- | -- |
| 108.33 | 0.486 | 10.2 | -0.117 | -- | -- | -- | -- | 0.0368 | -- | -- | -- | -- | -- |
| 44.39 | 0.312 | 10.2 | -- | 1.09 | -- | -- | -- | 0.0633 | 19.8 | -- | -- | -- | -- |
| 103.26 | 0.473 | 10.2 | -- | -- | 0.532 | -- | -- | 0.102 | -- | 47.93 | 2861 | -- | -- |
| 108.69 | 0.487 | 10.2 | -- | -- | -- | -- | -- | 0.0498 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.04 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 2 | 31.07 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 13 | 31.42 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 16 | 31.47 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 25 | 31.55 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 28 | 31.59 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 33 | 31.66 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 10 |
| 43 | 31.72 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 50 | 31.78 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 114 | 32.18 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 120 | 32.22 | radiation | 10 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 138 | 32.34 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 154 | 32.43 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 203 | 32.65 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 209 | 32.67 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 222 | 32.73 | radiation | 10 | 1440 | > th | dose independent | sin | 23 | NA |
| 226 | 32.76 | radiation | 10 | 1440 | > th | dose independent | rect. | 10 | 6 |
| 236 | 32.78 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 238 | 32.78 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 239 | 32.78 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 250 | 32.80 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 10 |
| 427 | 33.06 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 526 | 33.12 | radiation | 10 | 1440 | < th | dose dependent | sin | 20 | NA |
| 530 | 33.13 | humidity | 50 | 1440 | > th | dose dependent | rect. | 2 | 14 |
| 536 | 33.15 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 556 | 33.18 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 14 |
| 563 | 33.20 | humidity | 60 | 1440 | > th | dose dependent | sin | 0 | NA |
| 624 | 33.27 | humidity | 50 | 1440 | > th | dose dependent | rect. | 20 | 20 |
| 665 | 33.32 | humidity | 90 | 1440 | < th | dose dependent | sin | 1 | NA |
| 671 | 33.32 | humidity | 90 | 1440 | < th | dose dependent | rect. | 20 | 20 |
| 737 | 33.38 | humidity | 50 | 1440 | > th | dose dependent | rect. | 9 | 21 |
| 782 | 33.43 | humidity | 70 | 720 | > th | dose dependent | rect. | 7 | 18 |
| 793 | 33.45 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 795 | 33.45 | humidity | 60 | 1440 | > th | dose dependent | rect. | 9 | 12 |
| 804 | 33.46 | humidity | 50 | 1440 | > th | dose dependent | rect. | 9 | 15 |
| 832 | 33.48 | humidity | 50 | 1440 | > th | dose dependent | rect. | 1 | 20 |
| 909 | 33.53 | humidity | 50 | 1440 | > th | dose dependent | rect. | 2 | 22 |
| 918 | 33.54 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 926 | 33.54 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 19 |
| 934 | 33.54 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 21 |