Os03g0776100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Somatic embryogenesis receptor kinase-like protein.
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Os03g0776100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Somatic embryogenesis receptor kinase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.87 | 0.322 | 13.1 | 0.149 | 0.719 | 0.586 | -0.811 | -0.681 | -0.0583 | 21.2 | 29.36 | 263 | -- | -- |
| 46.93 | 0.319 | 13.1 | 0.0755 | 0.72 | 0.525 | -0.805 | -- | -0.0701 | 21.3 | 29.3 | 267 | -- | -- |
| 49.01 | 0.326 | 13.1 | 0.142 | 0.723 | 0.566 | -- | -0.413 | -0.063 | 21.3 | 29.2 | 273 | -- | -- |
| 49.05 | 0.326 | 13.1 | 0.0954 | 0.719 | 0.519 | -- | -- | -0.0726 | 21.5 | 29.3 | 273 | -- | -- |
| 75.36 | 0.404 | 13.1 | 0.187 | -- | 0.391 | -- | -0.479 | -0.0373 | -- | 28.3 | 81 | -- | -- |
| 55.17 | 0.348 | 13.1 | -0.0124 | 0.684 | -- | -0.594 | -- | -0.106 | 22.6 | -- | -- | -- | -- |
| 56.49 | 0.352 | 13.1 | 0.00964 | 0.686 | -- | -- | -- | -0.105 | 22.9 | -- | -- | -- | -- |
| 75.71 | 0.405 | 13.1 | 0.105 | -- | 0.368 | -- | -- | -0.0587 | -- | 28.29 | 90 | -- | -- |
| 49.28 | 0.327 | 13.1 | -- | 0.719 | 0.51 | -- | -- | -0.0826 | 21.5 | 29.26 | 273 | -- | -- |
| 85.67 | 0.433 | 13.1 | 0.0244 | -- | -- | -- | -- | -0.101 | -- | -- | -- | -- | -- |
| 56.49 | 0.352 | 13.1 | -- | 0.686 | -- | -- | -- | -0.106 | 22.9 | -- | -- | -- | -- |
| 76 | 0.406 | 13.1 | -- | -- | 0.36 | -- | -- | -0.0712 | -- | 28.26 | 88 | -- | -- |
| 85.69 | 0.432 | 13.1 | -- | -- | -- | -- | -- | -0.103 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.04 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 14 | 11 |
| 3 | 44.16 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 10 |
| 8 | 44.41 | temperature | 30.0 | 270 | < th | dose independent | rect. | 15 | 10 |
| 11 | 44.49 | wind | 7.0 | 270 | < th | dose independent | rect. | 1 | 15 |
| 16 | 44.57 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 17 | 10 |
| 21 | 44.75 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 9 |
| 23 | 44.77 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 17 | 10 |
| 29 | 44.81 | radiation | 1.0 | 30 | < th | dose dependent | sin | 15 | NA |
| 35 | 44.92 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 9 |
| 37 | 44.93 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 8 |
| 39 | 44.96 | radiation | 1.0 | 30 | < th | dose independent | sin | 15 | NA |
| 53 | 45.14 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 9 |
| 56 | 45.14 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 15 |
| 57 | 45.14 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 15 |
| 58 | 45.14 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 19 |
| 64 | 45.19 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 15 | 10 |
| 68 | 45.21 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 15 |
| 74 | 45.25 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 15 |
| 75 | 45.25 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 15 |
| 82 | 45.29 | wind | 7.0 | 270 | < th | dose independent | rect. | 11 | 7 |
| 85 | 45.30 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 9 |
| 89 | 45.33 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 9 | 16 |
| 98 | 45.39 | wind | 1.0 | 270 | > th | dose independent | rect. | 16 | 9 |
| 100 | 45.40 | humidity | 90.0 | 270 | < th | dose independent | rect. | 11 | 7 |
| 110 | 45.44 | radiation | 1.0 | 30 | < th | dose independent | rect. | 16 | 11 |
| 116 | 45.47 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 14 |
| 125 | 45.50 | radiation | 1.0 | 270 | > th | dose independent | rect. | 11 | 8 |
| 139 | 45.53 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 9 |
| 141 | 45.53 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 9 |
| 152 | 45.58 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 12 | 10 |
| 193 | 45.71 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 14 |
| 194 | 45.71 | radiation | 20.0 | 270 | < th | dose dependent | sin | 18 | NA |
| 197 | 45.72 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 12 | 7 |
| 209 | 45.73 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 16 | 9 |
| 219 | 45.75 | radiation | 10.0 | 270 | < th | dose independent | sin | 17 | NA |
| 283 | 45.85 | radiation | 1.0 | 90 | < th | dose independent | rect. | 9 | 18 |
| 297 | 45.87 | radiation | 1.0 | 270 | > th | dose independent | rect. | 10 | 20 |
| 309 | 45.92 | wind | 9.0 | 90 | < th | dose independent | rect. | 3 | 14 |
| 334 | 45.95 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 18 |
| 339 | 45.97 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 7 |
| 344 | 45.97 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 7 |
| 381 | 46.04 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 18 |
| 396 | 46.07 | radiation | 1.0 | 270 | > th | dose dependent | sin | 16 | NA |
| 422 | 46.14 | temperature | 10.0 | 270 | > th | dose independent | rect. | 11 | 7 |
| 424 | 46.14 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 11 | 7 |
| 426 | 46.14 | wind | 9.0 | 270 | < th | dose independent | rect. | 18 | 17 |
| 427 | 46.14 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 17 |
| 441 | 46.17 | radiation | 1.0 | 30 | > th | dose independent | sin | 15 | NA |
| 503 | 46.21 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 17 |
| 504 | 46.21 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 17 |
| 533 | 46.25 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 14 |
| 534 | 46.25 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 14 |
| 553 | 46.27 | radiation | 10.0 | 270 | > th | dose independent | sin | 17 | NA |
| 606 | 46.32 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 17 | 10 |
| 646 | 46.38 | temperature | 30.0 | 270 | < th | dose independent | sin | 23 | NA |
| 664 | 46.40 | wind | 1.0 | 270 | > th | dose independent | rect. | 11 | 7 |
| 678 | 46.42 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 14 |
| 681 | 46.42 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 716 | 46.48 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 16 |
| 722 | 46.49 | humidity | 60.0 | 10 | > th | dose independent | rect. | 18 | 9 |
| 743 | 46.52 | wind | 3.0 | 270 | > th | dose independent | rect. | 12 | 4 |
| 772 | 46.56 | radiation | 1.0 | 30 | > th | dose independent | rect. | 12 | 7 |
| 810 | 46.58 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 811 | 46.58 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 15 |
| 835 | 46.62 | radiation | 10.0 | 270 | > th | dose independent | rect. | 13 | 2 |
| 861 | 46.65 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 18 | 17 |
| 919 | 46.70 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 19 | 9 |
| 922 | 46.70 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 19 | 9 |
| 926 | 46.70 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 19 | 9 |
| 928 | 46.70 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 19 | 9 |
| 930 | 46.70 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 19 | 9 |
| 956 | 46.70 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 15 |
| 961 | 46.70 | temperature | 30.0 | 270 | < th | dose independent | rect. | 5 | 20 |
| 965 | 46.70 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 19 | 9 |
| 973 | 46.71 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 19 | 9 |