Os03g0775400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cytokine, IL-1 related family protein.
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Os03g0775400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cytokine, IL-1 related family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.87 | 0.37 | 9.12 | 0.696 | 2.43 | 1.35 | 1.18 | -0.0885 | 0.0843 | 19.8 | 0.1322 | 1310 | -- | -- |
| 61.48 | 0.365 | 9.12 | 0.686 | 2.53 | 1.48 | 1.14 | -- | 0.0785 | 19.9 | 0.06 | 1276 | -- | -- |
| 62.96 | 0.37 | 9.11 | 0.691 | 2.7 | 1.36 | -- | -1.61 | 0.0547 | 19.9 | 0.4597 | 1185 | -- | -- |
| 65.38 | 0.377 | 9.12 | 0.658 | 2.72 | 1.59 | -- | -- | 0.0746 | 20 | 0.05989 | 1220 | -- | -- |
| 275.51 | 0.773 | 9.21 | 0.233 | -- | -1.4 | -- | 1.53 | -0.194 | -- | 74.84 | 2231 | -- | -- |
| 77.52 | 0.413 | 9.14 | 0.361 | 2.14 | -- | 1.18 | -- | -0.0476 | 19.4 | -- | -- | -- | -- |
| 81.32 | 0.422 | 9.14 | 0.334 | 2.15 | -- | -- | -- | -0.0456 | 19.4 | -- | -- | -- | -- |
| 167.29 | 0.602 | 9.13 | 0.182 | -- | -2.09 | -- | -- | -0.292 | -- | 83.27 | 789 | -- | -- |
| 75.22 | 0.404 | 9.13 | -- | 2.65 | 1.3 | -- | -- | 0.0734 | 19.8 | 0.36 | 1205 | -- | -- |
| 326.98 | 0.845 | 9.09 | 0.3 | -- | -- | -- | -- | -0.08 | -- | -- | -- | -- | -- |
| 84.26 | 0.429 | 9.15 | -- | 2.14 | -- | -- | -- | -0.0828 | 19.5 | -- | -- | -- | -- |
| 168.14 | 0.604 | 9.14 | -- | -- | -2.1 | -- | -- | -0.314 | -- | 90.51 | 795 | -- | -- |
| 329.36 | 0.847 | 9.09 | -- | -- | -- | -- | -- | -0.113 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.37 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 22 | 8 |
| 6 | 59.86 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 18 | 16 |
| 7 | 59.94 | temperature | 30.0 | 10 | < th | dose dependent | sin | 7 | NA |
| 23 | 61.09 | temperature | 20.0 | 10 | > th | dose dependent | sin | 7 | NA |
| 29 | 61.26 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 21 | 15 |
| 48 | 61.92 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 49 | 61.92 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 51 | 62.01 | temperature | 20.0 | 270 | > th | dose independent | rect. | 17 | 17 |
| 69 | 62.38 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 23 | 9 |
| 80 | 62.62 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 81 | 62.62 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 86 | 62.70 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 23 | 12 |
| 87 | 62.71 | temperature | 20.0 | 90 | > th | dose independent | rect. | 20 | 16 |
| 95 | 62.81 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 98 | 62.84 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 122 | 63.02 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 13 | 5 |
| 139 | 63.10 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 146 | 63.12 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 155 | 63.15 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 180 | 63.22 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 236 | 63.37 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 20 | 10 |
| 331 | 63.66 | temperature | 10.0 | 1440 | > th | dose dependent | sin | 22 | NA |
| 369 | 63.74 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 18 |
| 376 | 63.76 | temperature | 30.0 | 1440 | < th | dose dependent | sin | 21 | NA |
| 383 | 63.77 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 21 |
| 406 | 63.82 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 409 | 63.82 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 418 | 63.84 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 15 | 15 |
| 422 | 63.86 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 433 | 63.87 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 449 | 63.91 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 461 | 63.94 | radiation | 1.0 | 270 | < th | dose dependent | sin | 8 | NA |
| 467 | 63.94 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 22 |
| 479 | 63.97 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 14 | NA |
| 484 | 63.98 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 485 | 63.98 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 6 | 5 |
| 504 | 64.00 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 16 | 20 |
| 505 | 64.01 | wind | 5.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 509 | 64.01 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 20 |
| 524 | 64.04 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 532 | 64.06 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 547 | 64.07 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 22 |
| 550 | 64.08 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 556 | 64.08 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 15 | 10 |
| 566 | 64.09 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 24 | 19 |
| 571 | 64.10 | wind | 7.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 576 | 64.10 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 4 | 15 |
| 605 | 64.12 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 606 | 64.12 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 609 | 64.12 | radiation | 1.0 | 1440 | < th | dose dependent | no | NA | NA |
| 610 | 64.12 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 613 | 64.12 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 4 | 10 |
| 637 | 64.13 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 638 | 64.13 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 665 | 64.14 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 10 | 21 |
| 671 | 64.15 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 672 | 64.15 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 684 | 64.16 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 722 | 64.19 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 724 | 64.20 | humidity | 50.0 | 43200 | < th | dose dependent | sin | 10 | NA |
| 725 | 64.20 | humidity | 60.0 | 43200 | < th | dose dependent | sin | 5 | NA |
| 726 | 64.20 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 745 | 64.22 | wind | 7.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 746 | 64.22 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 776 | 64.25 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 794 | 64.27 | wind | 5.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 823 | 64.29 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 23 | 16 |
| 826 | 64.29 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 1 | 18 |
| 827 | 64.29 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 23 | 20 |
| 838 | 64.30 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 4 | 11 |
| 897 | 64.32 | humidity | 50.0 | 43200 | > th | dose independent | sin | 3 | NA |
| 920 | 64.33 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 4 | 9 |
| 949 | 64.34 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 4 | 15 |
| 964 | 64.34 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 22 | 22 |
| 966 | 64.35 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 970 | 64.35 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 4 | 13 |