Os03g0774600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os03g0774600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.12 | 0.385 | 9.73 | -1.41 | 0.283 | 1.21 | -0.285 | -2.24 | -0.543 | 6.34 | 24.44 | 1680 | -- | -- |
| 68.29 | 0.385 | 9.64 | -0.806 | 0.29 | 1.03 | -0.295 | -- | -0.31 | 6.31 | 25.82 | 1800 | -- | -- |
| 66.72 | 0.38 | 9.73 | -1.43 | 0.328 | 1.29 | -- | -2.72 | -0.482 | 6.78 | 25.79 | 1763 | -- | -- |
| 68.15 | 0.384 | 9.64 | -0.784 | 0.308 | 1.06 | -- | -- | -0.284 | 6.75 | 26.4 | 1823 | -- | -- |
| 69.73 | 0.389 | 9.71 | -1.23 | -- | 1.04 | -- | -1.64 | -0.443 | -- | 25.28 | 1425 | -- | -- |
| 102.96 | 0.476 | 9.63 | -0.484 | 0.193 | -- | -0.226 | -- | -0.242 | 5.98 | -- | -- | -- | -- |
| 103.08 | 0.475 | 9.63 | -0.485 | 0.192 | -- | -- | -- | -0.241 | 6.18 | -- | -- | -- | -- |
| 66.72 | 0.38 | 9.65 | -0.841 | -- | 0.982 | -- | -- | -0.33 | -- | 26.1 | 5844 | -- | -- |
| 82.85 | 0.424 | 9.6 | -- | 0.284 | 0.914 | -- | -- | -0.136 | 6.99 | 27.7 | 1889 | -- | -- |
| 105 | 0.479 | 9.63 | -0.48 | -- | -- | -- | -- | -0.236 | -- | -- | -- | -- | -- |
| 109.29 | 0.489 | 9.62 | -- | 0.186 | -- | -- | -- | -0.187 | 6.31 | -- | -- | -- | -- |
| 82.7 | 0.424 | 9.62 | -- | -- | 0.742 | -- | -- | -0.155 | -- | 27.9 | 5824 | -- | -- |
| 111.07 | 0.492 | 9.62 | -- | -- | -- | -- | -- | -0.183 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.43 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 5 | 64.25 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 7 |
| 6 | 64.26 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 5 |
| 38 | 65.58 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 3 |
| 41 | 65.59 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 15 |
| 53 | 65.74 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 68 | 65.96 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 72 | 66.01 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 116 | 66.55 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 126 | 66.75 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 2 |
| 127 | 66.82 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 151 | 67.14 | temperature | 25 | 1440 | > th | dose dependent | rect. | 1 | 19 |
| 154 | 67.15 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 164 | 67.20 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 257 | 67.76 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 296 | 67.87 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 326 | 67.99 | humidity | 80 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 348 | 68.26 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 356 | 68.28 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 359 | 68.31 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 372 | 68.44 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 472 | 68.85 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 12 |
| 473 | 68.85 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 14 |
| 479 | 68.86 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 10 |
| 506 | 68.92 | temperature | 25 | 4320 | > th | dose dependent | sin | 4 | NA |
| 549 | 68.98 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 706 | 69.27 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 711 | 69.27 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 10 |
| 714 | 69.28 | humidity | 70 | 14400 | > th | dose dependent | rect. | 18 | 1 |