Os03g0773300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os03g0773300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 160.82 | 0.596 | 11 | -0.121 | 1.28 | 10.5 | 0.614 | -28.3 | 0.563 | 22.2 | 0.1985 | 87 | -- | -- |
| 171.81 | 0.61 | 10.9 | -0.16 | 1.2 | 2.63 | 1.06 | -- | 0.462 | 21.7 | 1.054 | 151 | -- | -- |
| 162.3 | 0.593 | 11 | -0.147 | 1.28 | 10.5 | -- | -27.9 | 0.562 | 22.2 | 0.1809 | 86 | -- | -- |
| 168.33 | 0.604 | 10.9 | 0.0379 | 1.26 | 2.89 | -- | -- | 0.536 | 22.3 | 1.34 | 146 | -- | -- |
| 260.13 | 0.751 | 10.9 | -0.113 | -- | 8.84 | -- | -19.4 | 0.56 | -- | 0.0708 | 86 | -- | -- |
| 181.94 | 0.632 | 10.9 | 0.142 | 1.3 | -- | 0.804 | -- | 0.525 | 22.1 | -- | -- | -- | -- |
| 184.5 | 0.636 | 10.9 | 0.11 | 1.3 | -- | -- | -- | 0.523 | 22.1 | -- | -- | -- | -- |
| 257.17 | 0.747 | 10.9 | 0.0273 | -- | 3.41 | -- | -- | 0.548 | -- | 1.927 | 292 | -- | -- |
| 164.67 | 0.598 | 10.9 | -- | 1.25 | 3.52 | -- | -- | 0.531 | 22.3 | 1.574 | 175 | -- | -- |
| 286.55 | 0.791 | 10.9 | 0.128 | -- | -- | -- | -- | 0.525 | -- | -- | -- | -- | -- |
| 184.82 | 0.636 | 10.9 | -- | 1.3 | -- | -- | -- | 0.511 | 22.1 | -- | -- | -- | -- |
| 257.19 | 0.747 | 10.9 | -- | -- | 3.43 | -- | -- | 0.545 | -- | 1.919 | 292 | -- | -- |
| 286.98 | 0.791 | 10.9 | -- | -- | -- | -- | -- | 0.511 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 157.74 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 3 | 16 |
| 5 | 158.96 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 20 | 23 |
| 9 | 159.16 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 16 | 2 |
| 11 | 159.23 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 15 | 3 |
| 17 | 159.47 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 17 |
| 41 | 160.14 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 16 | 16 |
| 49 | 160.21 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 13 | 19 |
| 102 | 160.72 | precipitation | 0.1 | 30 | > th | dose independent | sin | 0 | NA |
| 104 | 160.73 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 16 | 22 |
| 126 | 160.92 | precipitation | 0.1 | 90 | > th | dose independent | no | NA | NA |
| 127 | 160.92 | precipitation | 0.1 | 90 | < th | dose independent | no | NA | NA |
| 134 | 160.92 | precipitation | 0.1 | 90 | < th | dose dependent | no | NA | NA |
| 135 | 160.93 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 7 | 23 |
| 166 | 161.16 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 5 | 23 |
| 167 | 161.17 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 169 | 161.18 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 16 | 16 |
| 173 | 161.20 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 13 | 19 |
| 195 | 161.25 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 212 | 161.43 | humidity | 70.0 | 720 | > th | dose independent | rect. | 17 | 4 |
| 222 | 161.47 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 16 | 22 |
| 237 | 161.56 | precipitation | 0.1 | 90 | > th | dose dependent | no | NA | NA |
| 240 | 161.56 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 265 | 161.64 | precipitation | 0.1 | 90 | > th | dose dependent | sin | 1 | NA |
| 266 | 161.66 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 273 | 161.67 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 9 | 9 |
| 290 | 161.81 | humidity | 70.0 | 720 | > th | dose independent | rect. | 17 | 11 |
| 299 | 161.93 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 5 | 13 |
| 305 | 161.96 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 22 | 7 |
| 356 | 162.56 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 385 | 162.83 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 447 | 163.45 | precipitation | 0.1 | 90 | < th | dose independent | sin | 1 | NA |
| 449 | 163.45 | precipitation | 0.1 | 90 | < th | dose dependent | sin | 1 | NA |
| 456 | 163.51 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 461 | 163.55 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 16 | 3 |
| 477 | 163.67 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 15 | 6 |
| 478 | 163.68 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 479 | 163.68 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 480 | 163.69 | precipitation | 0.1 | 90 | > th | dose independent | sin | 13 | NA |
| 491 | 163.76 | precipitation | 0.1 | 90 | < th | dose independent | sin | 14 | NA |
| 492 | 163.76 | precipitation | 0.1 | 90 | < th | dose dependent | sin | 14 | NA |
| 495 | 163.78 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 496 | 163.79 | precipitation | 0.1 | 90 | > th | dose dependent | sin | 12 | NA |
| 506 | 163.87 | temperature | 25.0 | 10 | < th | dose independent | rect. | 16 | 4 |
| 528 | 164.00 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 530 | 164.00 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 534 | 164.01 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 535 | 164.01 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 543 | 164.04 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 593 | 164.20 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 13 | 8 |
| 602 | 164.23 | precipitation | 0.1 | 10 | > th | dose dependent | sin | 22 | NA |
| 604 | 164.24 | temperature | 25.0 | 270 | < th | dose independent | rect. | 17 | 1 |
| 723 | 164.74 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 17 | 1 |
| 732 | 164.77 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 13 | 18 |
| 762 | 164.96 | humidity | 80.0 | 720 | < th | dose dependent | sin | 15 | NA |
| 768 | 164.98 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 16 | 3 |
| 778 | 165.00 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 16 | 1 |
| 801 | 165.07 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 855 | 165.26 | humidity | 70.0 | 720 | < th | dose dependent | rect. | 15 | 3 |
| 859 | 165.28 | wind | 1.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 874 | 165.35 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 885 | 165.35 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 914 | 165.42 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 13 | 6 |
| 923 | 165.44 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 928 | 165.45 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 950 | 165.47 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 954 | 165.50 | humidity | 70.0 | 720 | < th | dose independent | rect. | 17 | 1 |