Os03g0772800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cytochrome c oxidase, subunit VIa family protein.
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Os03g0772800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cytochrome c oxidase, subunit VIa family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.45 | 0.179 | 12.6 | -0.611 | 0.148 | 1.3 | 0.542 | 0.208 | -0.211 | 11.9 | 9.979 | 734 | -- | -- |
| 14.48 | 0.177 | 12.6 | -0.646 | 0.148 | 1.31 | 0.513 | -- | -0.222 | 11.9 | 8.85 | 736 | -- | -- |
| 15.57 | 0.184 | 12.6 | -0.639 | 0.141 | 1.32 | -- | -0.115 | -0.221 | 11.6 | 12.86 | 718 | -- | -- |
| 15.56 | 0.184 | 12.6 | -0.622 | 0.131 | 1.33 | -- | -- | -0.221 | 9.94 | 6.605 | 655 | -- | -- |
| 16.29 | 0.188 | 12.6 | -0.598 | -- | 1.24 | -- | -0.0916 | -0.206 | -- | 12.98 | 587 | -- | -- |
| 37.2 | 0.286 | 12.6 | -0.293 | 0.225 | -- | 0.128 | -- | -0.0176 | 18.5 | -- | -- | -- | -- |
| 37.22 | 0.286 | 12.6 | -0.295 | 0.226 | -- | -- | -- | -0.0176 | 18.8 | -- | -- | -- | -- |
| 16.3 | 0.188 | 12.6 | -0.589 | -- | 1.24 | -- | -- | -0.204 | -- | 13.14 | 587 | -- | -- |
| 24.37 | 0.23 | 12.6 | -- | 0.0581 | 1.08 | -- | -- | -0.119 | 7.34 | 11.81 | 520 | -- | -- |
| 39.89 | 0.295 | 12.6 | -0.3 | -- | -- | -- | -- | -0.0219 | -- | -- | -- | -- | -- |
| 39.52 | 0.294 | 12.5 | -- | 0.229 | -- | -- | -- | 0.0153 | 18.8 | -- | -- | -- | -- |
| 24.52 | 0.231 | 12.6 | -- | -- | 1.03 | -- | -- | -0.112 | -- | 11.02 | 521 | -- | -- |
| 42.27 | 0.303 | 12.5 | -- | -- | -- | -- | -- | 0.0114 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.20 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 3 | 14.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 4 | 14.24 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 5 | 14.25 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 6 | 14.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 15 | 14.33 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 31 | 14.45 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 87 | 14.83 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 96 | 14.88 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 123 | 15.03 | temperature | 20 | 1440 | > th | dose dependent | rect. | 10 | 10 |
| 174 | 15.14 | temperature | 20 | 1440 | > th | dose dependent | sin | 21 | NA |
| 210 | 15.18 | temperature | 10 | 1440 | > th | dose dependent | sin | 21 | NA |
| 331 | 15.33 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 401 | 15.43 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 20 |
| 403 | 15.44 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 513 | 15.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 573 | 15.63 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 663 | 15.73 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 702 | 15.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 703 | 15.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 826 | 15.94 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 828 | 15.94 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 15 |
| 854 | 15.97 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 4 |