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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0771100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Myb, DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.82 (0.0397) R2 : 0.529
β1 : 1.47 (0.147) R2dD : 0.118 R2D : 0.179
β2 : 1.04 (0.0956) R2dC : 0.118 R2C : 0.111
β3 : -1.46 (0.11) R2dE : 0.237 R2E : 0.293
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0024 (0.0934) R2dN8 : -9.67e-06 R2N8 : -0.000563
σ : 0.717
deviance : 236.81
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_____
C
peak time of C : 8.79
E
wheather : temperature
threshold : 23.1
memory length : 1764
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
229.39 0.712 4.92 0.646 0.977 -1.86 0.733 2.61 -0.264 9.09 24.79 1479 -- --
238.61 0.719 4.83 1.36 0.952 -1.87 0.555 -- -0.102 9.15 24.7 1489 -- --
231.16 0.708 4.92 0.661 0.982 -1.87 -- 2.66 -0.26 8.97 24.76 1501 -- --
236.81 0.717 4.82 1.47 1.04 -1.46 -- -- 0.0024 8.79 23.1 1764 -- --
285.77 0.787 4.94 0.692 -- -1.83 -- 2.49 -0.255 -- 24.66 1472 -- --
323.26 0.843 4.69 2.03 0.994 -- 0.766 -- 0.583 8.71 -- -- -- --
325.18 0.844 4.69 2.05 0.993 -- -- -- 0.583 8.66 -- -- -- --
292.27 0.796 4.82 1.48 -- -1.44 -- -- 0.0343 -- 23.1 1575 -- --
253.31 0.741 4.89 -- 1.07 -2.27 -- -- -0.29 8.98 21.5 8214 -- --
380.85 0.912 4.72 2.05 -- -- -- -- 0.592 -- -- -- -- --
436.18 0.977 4.74 -- 1 -- -- -- 0.354 8.5 -- -- -- --
306.87 0.816 4.88 -- -- -2.19 -- -- -0.136 -- 18.7 27435 -- --
492.21 1.04 4.77 -- -- -- -- -- 0.364 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 227.36 temperature 25 1440 > th dose independent rect. 10 13
2 227.56 temperature 25 1440 < th dose independent rect. 10 14
16 228.42 temperature 25 1440 > th dose independent sin 20 NA
22 228.56 temperature 25 1440 < th dose independent sin 20 NA
38 228.99 temperature 25 1440 < th dose independent rect. 5 18
46 229.12 temperature 25 1440 < th dose independent rect. 3 20
52 229.21 temperature 25 1440 > th dose independent rect. 5 18
114 230.26 temperature 25 4320 > th dose independent rect. 11 1
119 230.32 temperature 25 4320 < th dose independent rect. 11 1
142 230.65 temperature 25 1440 < th dose independent rect. 9 22
194 231.23 temperature 25 1440 > th dose independent rect. 9 22
234 231.71 temperature 25 1440 < th dose independent no NA NA
237 231.77 temperature 25 1440 < th dose independent rect. 20 23
265 232.36 temperature 25 1440 > th dose independent rect. 20 23
268 232.39 temperature 25 1440 < th dose independent rect. 10 3
270 232.44 temperature 25 1440 > th dose independent no NA NA
271 232.48 temperature 25 1440 < th dose independent rect. 15 23
277 232.55 temperature 25 1440 > th dose independent rect. 10 3
301 232.95 temperature 20 1440 > th dose dependent rect. 11 20
329 233.41 temperature 25 1440 > th dose independent rect. 15 23
396 234.19 temperature 25 4320 > th dose independent rect. 7 7
423 234.45 temperature 25 1440 < th dose independent rect. 5 10
458 234.66 temperature 20 1440 > th dose dependent rect. 21 20
488 234.81 temperature 20 1440 > th dose dependent sin 15 NA
523 235.03 temperature 30 1440 < th dose dependent rect. 11 16
562 235.17 temperature 20 1440 > th dose dependent no NA NA
580 235.24 temperature 20 30 > th dose dependent rect. 3 23
614 235.40 temperature 20 1440 > th dose dependent rect. 4 23
642 235.51 temperature 20 1440 > th dose dependent rect. 15 23
791 236.15 temperature 25 1440 < th dose independent rect. 15 5
814 236.26 temperature 20 30 > th dose dependent no NA NA
824 236.29 temperature 30 1440 < th dose dependent sin 18 NA
834 236.32 temperature 25 4320 > th dose independent rect. 16 2
884 236.53 temperature 25 4320 < th dose independent rect. 16 2
915 236.72 temperature 30 1440 < th dose dependent rect. 24 19
941 236.80 temperature 30 1440 < th dose dependent rect. 21 21
991 236.94 temperature 30 1440 < th dose dependent rect. 4 23
994 236.95 temperature 20 30 > th dose dependent rect. 21 23
1000 236.98 temperature 30 1440 < th dose dependent no NA NA