Os03g0770700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ANT (Ovule development protein aintegumenta).
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Os03g0770700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ANT (Ovule development protein aintegumenta).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 111.72 | 0.497 | 3.06 | 1.82 | 0.113 | -1.14 | 0.135 | 15.4 | -0.161 | 11.2 | 31.59 | 4265 | -- | -- |
| 135.19 | 0.546 | 3.39 | -0.444 | 0.0929 | 0.32 | -0.00646 | -- | -0.381 | 4.23 | 22.8 | 47520 | -- | -- |
| 111.66 | 0.492 | 3.06 | 1.82 | 0.113 | -1.16 | -- | 15.7 | -0.158 | 11 | 31.81 | 4260 | -- | -- |
| 135.19 | 0.545 | 3.39 | -0.444 | 0.0929 | 0.32 | -- | -- | -0.381 | 4.23 | 22.8 | 47520 | -- | -- |
| 112.38 | 0.494 | 3.07 | 1.79 | -- | -1.18 | -- | 15.8 | -0.164 | -- | 31.9 | 4268 | -- | -- |
| 141.7 | 0.558 | 3.36 | -0.312 | 0.0951 | -- | 0.079 | -- | -0.266 | 8.68 | -- | -- | -- | -- |
| 141.72 | 0.557 | 3.36 | -0.31 | 0.095 | -- | -- | -- | -0.266 | 8.63 | -- | -- | -- | -- |
| 135.64 | 0.545 | 3.38 | -0.435 | -- | 0.306 | -- | -- | -0.373 | -- | 22.8 | 47520 | -- | -- |
| 140.03 | 0.554 | 3.37 | -- | 0.0759 | 0.248 | -- | -- | -0.309 | 5.33 | 22.8 | 47520 | -- | -- |
| 142.22 | 0.557 | 3.36 | -0.31 | -- | -- | -- | -- | -0.265 | -- | -- | -- | -- | -- |
| 144.25 | 0.562 | 3.35 | -- | 0.0942 | -- | -- | -- | -0.231 | 8.88 | -- | -- | -- | -- |
| 140.33 | 0.554 | 3.37 | -- | -- | 0.244 | -- | -- | -0.306 | -- | 22.8 | 47520 | -- | -- |
| 144.75 | 0.562 | 3.35 | -- | -- | -- | -- | -- | -0.231 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 109.17 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 15 | 109.20 | temperature | 30 | 4320 | < th | dose independent | rect. | 5 | 5 |
| 16 | 109.26 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 17 | 109.26 | temperature | 30 | 4320 | < th | dose independent | rect. | 24 | 10 |
| 19 | 109.29 | temperature | 30 | 4320 | < th | dose independent | rect. | 3 | 7 |
| 29 | 109.61 | temperature | 30 | 4320 | > th | dose dependent | rect. | 8 | 4 |
| 44 | 109.75 | temperature | 30 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 58 | 109.76 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 132 | 110.16 | atmosphere | 1000 | 270 | < th | dose dependent | sin | 8 | NA |
| 183 | 110.70 | temperature | 30 | 4320 | > th | dose independent | rect. | 17 | 18 |
| 185 | 110.71 | temperature | 30 | 4320 | > th | dose dependent | sin | 8 | NA |
| 187 | 110.72 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 18 |
| 189 | 110.75 | atmosphere | 1000 | 10 | < th | dose dependent | sin | 6 | NA |
| 200 | 111.04 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 20 | 17 |
| 205 | 111.11 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 19 | 13 |
| 212 | 111.19 | temperature | 30 | 4320 | > th | dose independent | sin | 9 | NA |
| 237 | 111.35 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 19 | 12 |
| 248 | 111.46 | temperature | 30 | 4320 | < th | dose independent | sin | 9 | NA |
| 265 | 111.69 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 268 | 111.72 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 1 | 3 |
| 270 | 111.74 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 23 | 5 |
| 278 | 111.80 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 417 | 112.62 | temperature | 30 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 564 | 113.36 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |
| 696 | 113.48 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 18 | 19 |
| 737 | 113.65 | atmosphere | 1000 | 270 | < th | dose independent | sin | 8 | NA |
| 765 | 113.78 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 20 | 16 |
| 791 | 113.87 | atmosphere | 1000 | 270 | > th | dose independent | sin | 8 | NA |
| 912 | 114.52 | atmosphere | 1000 | 10 | > th | dose independent | sin | 6 | NA |