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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0770100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3 (0.0138) R2 : 2.48e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0031 (0.0291) R2dN8 : 3.2e-05 R2N8 : 2.48e-05
σ : 0.261
deviance : 31.17
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
29.81 0.257 2.98 0.157 0.183 0.188 -0.909 -0.873 0.0309 12.1 0.04764 82 -- --
30.55 0.259 2.99 0.0917 0.106 0.112 0.0739 -- 0.0142 10.5 0.04764 82 -- --
30.25 0.256 2.99 0.141 0.175 0.181 -- -0.141 0.026 12.3 0.03999 83 -- --
30.35 0.257 2.98 0.117 0.197 0.19 -- -- 0.0266 12.2 1.156e-05 83 -- --
30.66 0.259 2.99 0.0925 -- 0.0478 -- -0.101 0.0107 -- 0.02992 117 -- --
30.89 0.261 2.99 0.0845 0.0355 -- -0.0313 -- 0.00558 1.64 -- -- -- --
30.9 0.26 2.99 0.0854 0.036 -- -- -- 0.00569 2.07 -- -- -- --
30.7 0.258 2.99 0.0826 -- 0.0531 -- -- 0.00211 -- 0.03018 83 -- --
30.65 0.258 2.98 -- 0.204 0.199 -- -- 0.0244 12.2 0.04 83 -- --
30.98 0.26 2.99 0.0869 -- -- -- -- 0.00655 -- -- -- -- --
31.09 0.261 3 -- 0.0376 -- -- -- -0.00382 2.12 -- -- -- --
30.91 0.259 2.99 -- -- 0.0531 -- -- 0.00211 -- 0.03018 83 -- --
31.17 0.261 3 -- -- -- -- -- -0.0031 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 22.22 wind 3.0 30 < th dose dependent rect. 2 1
2 22.25 wind 1.0 30 < th dose independent rect. 2 1
4 22.27 atmosphere 1005.0 30 > th dose dependent rect. 2 1
8 22.31 temperature 25.0 30 < th dose independent rect. 2 1
9 22.31 temperature 10.0 30 > th dose dependent rect. 2 1
11 22.32 humidity 80.0 30 > th dose independent rect. 2 1
15 22.34 temperature 10.0 30 > th dose independent rect. 2 1
18 22.34 humidity 50.0 30 > th dose independent rect. 2 1
21 22.34 atmosphere 995.0 30 > th dose independent rect. 2 1
22 22.34 atmosphere 1010.0 30 < th dose independent rect. 2 1
24 22.34 radiation 1.0 30 < th dose independent rect. 2 1
29 22.34 precipitation 0.1 30 < th dose independent rect. 2 1
30 22.34 temperature 10.0 30 > th dose independent rect. 3 23
32 22.34 humidity 50.0 30 > th dose dependent rect. 2 1
34 22.34 radiation 1.0 30 < th dose dependent rect. 2 1
39 22.34 precipitation 0.1 30 < th dose dependent rect. 2 1
45 22.40 atmosphere 1005.0 30 > th dose independent rect. 2 1
47 22.44 atmosphere 1015.0 30 < th dose dependent rect. 2 1
49 22.57 temperature 30.0 30 < th dose dependent rect. 2 1
59 23.05 wind 9.0 30 < th dose independent rect. 3 23
65 23.15 wind 1.0 30 > th dose independent rect. 2 1
112 26.83 atmosphere 995.0 30 > th dose independent rect. 3 23
116 27.18 precipitation 0.1 30 < th dose independent rect. 3 23
117 27.18 precipitation 0.1 30 < th dose dependent rect. 3 23
141 28.20 wind 9.0 4320 < th dose independent rect. 3 1
143 28.21 temperature 10.0 1440 > th dose independent rect. 3 1
146 28.21 temperature 30.0 1440 < th dose independent rect. 3 1
150 28.21 humidity 50.0 1440 > th dose independent rect. 3 1
159 28.21 atmosphere 995.0 1440 > th dose independent rect. 3 1
160 28.21 radiation 1.0 1440 < th dose independent rect. 3 1
180 28.21 temperature 10.0 1440 > th dose independent rect. 4 23
183 28.21 radiation 1.0 1440 < th dose dependent rect. 3 1
220 28.36 wind 1.0 30 > th dose dependent rect. 2 1
225 28.41 humidity 90.0 90 < th dose independent rect. 2 1
255 28.50 atmosphere 1015.0 1440 < th dose independent rect. 3 1
258 28.52 atmosphere 1015.0 30 < th dose independent rect. 3 23
260 28.54 wind 9.0 30 < th dose dependent rect. 3 23
265 28.63 humidity 50.0 30 > th dose independent rect. 3 23
358 29.18 wind 9.0 10 > th dose independent rect. 18 1
361 29.18 wind 9.0 10 > th dose dependent rect. 18 1
365 29.19 temperature 25.0 270 > th dose independent rect. 23 3
366 29.19 radiation 10.0 1440 < th dose dependent rect. 21 1
373 29.22 temperature 20.0 30 > th dose independent rect. 20 1
376 29.22 wind 9.0 30 < th dose dependent rect. 20 1
380 29.23 wind 1.0 30 > th dose independent rect. 20 1
381 29.23 wind 5.0 30 < th dose independent rect. 20 1
384 29.23 temperature 10.0 30 > th dose independent rect. 20 1
386 29.23 temperature 30.0 30 < th dose independent rect. 20 1
387 29.23 humidity 50.0 30 > th dose independent rect. 20 1
390 29.23 humidity 90.0 30 < th dose independent rect. 20 1
391 29.23 atmosphere 995.0 30 > th dose independent rect. 20 1
394 29.23 atmosphere 1010.0 30 < th dose independent rect. 20 1
396 29.23 radiation 1.0 30 < th dose independent rect. 20 1
401 29.23 precipitation 0.1 30 < th dose independent rect. 20 1
403 29.23 temperature 10.0 30 > th dose independent rect. 21 23
405 29.23 humidity 50.0 30 > th dose dependent rect. 20 1
407 29.23 atmosphere 995.0 30 > th dose dependent rect. 20 1
410 29.23 radiation 1.0 30 < th dose dependent rect. 20 1
415 29.23 precipitation 0.1 30 < th dose dependent rect. 20 1
416 29.23 temperature 25.0 90 > th dose dependent rect. 19 5
417 29.24 temperature 10.0 1440 > th dose independent rect. 21 1
420 29.24 temperature 30.0 1440 < th dose independent rect. 21 1
425 29.24 humidity 50.0 1440 > th dose independent rect. 21 1
431 29.24 atmosphere 995.0 1440 > th dose independent rect. 21 1
432 29.24 radiation 1.0 1440 < th dose independent rect. 21 1
453 29.24 temperature 10.0 1440 > th dose independent rect. 22 23
458 29.24 temperature 10.0 30 > th dose dependent rect. 20 1
460 29.24 atmosphere 1015.0 30 < th dose dependent rect. 20 1
463 29.24 temperature 25.0 90 > th dose dependent rect. 19 2
465 29.25 wind 1.0 30 > th dose dependent rect. 20 1
466 29.25 temperature 30.0 30 < th dose dependent rect. 20 1
468 29.25 humidity 90.0 30 < th dose dependent rect. 20 1
469 29.25 temperature 20.0 90 > th dose dependent rect. 19 8
493 29.31 wind 3.0 30 < th dose independent rect. 3 23
503 29.32 wind 1.0 10 < th dose independent rect. 15 12
509 29.33 wind 1.0 10 < th dose independent rect. 17 10
540 29.34 wind 1.0 10 > th dose independent rect. 21 23
558 29.36 wind 9.0 10 < th dose independent rect. 21 23
652 29.43 humidity 50.0 30 > th dose dependent rect. 3 23
678 29.45 wind 9.0 90 > th dose dependent rect. 17 4
692 29.46 wind 1.0 10 > th dose independent rect. 21 10
726 29.48 atmosphere 1000.0 10 > th dose independent rect. 21 23
728 29.48 temperature 25.0 270 > th dose dependent rect. 23 1
731 29.48 radiation 1.0 90 < th dose dependent rect. 5 23
735 29.49 humidity 70.0 30 > th dose dependent rect. 3 23
775 29.54 temperature 25.0 270 > th dose independent rect. 17 10
781 29.55 wind 9.0 90 > th dose independent sin 13 NA
795 29.56 precipitation 0.1 30 < th dose independent rect. 21 23
796 29.56 wind 9.0 90 > th dose dependent sin 13 NA
801 29.56 precipitation 0.1 30 < th dose dependent rect. 21 23
814 29.58 wind 9.0 90 < th dose independent sin 12 NA
832 29.59 humidity 50.0 720 > th dose independent rect. 13 2
868 29.60 wind 9.0 90 > th dose independent rect. 13 5
870 29.60 atmosphere 995.0 720 > th dose independent rect. 3 12
934 29.61 radiation 1.0 90 < th dose independent rect. 5 23
956 29.62 wind 9.0 90 > th dose independent rect. 13 9
983 29.62 radiation 10.0 10 < th dose independent rect. 3 23
991 29.63 humidity 70.0 90 < th dose independent rect. 19 1