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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0770000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Eukaryotic transcription factor, DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.96 (0.0334) R2 : 5.56e-06
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00355 (0.0704) R2dN8 : 7.18e-06 R2N8 : 5.56e-06
σ : 0.63
deviance : 182.12
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
144.79 0.565 4.83 1.21 0.124 -1.15 0.319 2.75 0.393 5.57 19.3 756 -- --
151.01 0.572 4.9 0.637 0.173 -1.07 0.111 -- 0.217 4.91 17.83 810 -- --
145.01 0.561 4.83 1.18 0.132 -1.14 -- 2.62 0.38 6.08 19.25 758 -- --
150.46 0.571 4.9 0.659 0.211 -1.19 -- -- 0.208 5.61 14.82 830 -- --
145.57 0.562 4.83 1.2 -- -1.22 -- 2.68 0.398 -- 19.33 710 -- --
169.95 0.611 4.94 0.313 0.413 -- -0.314 -- 0.0324 8.09 -- -- -- --
170.23 0.611 4.94 0.304 0.415 -- -- -- 0.0323 7.95 -- -- -- --
151.49 0.573 4.9 0.613 -- -1.12 -- -- 0.235 -- 18.42 683 -- --
159.08 0.591 4.91 -- 0.499 -1.13 -- -- 0.133 10.5 13.39 758 -- --
179.61 0.626 4.95 0.308 -- -- -- -- 0.0377 -- -- -- -- --
172.66 0.615 4.95 -- 0.417 -- -- -- -0.00153 7.9 -- -- -- --
160.25 0.59 4.93 -- -- -0.902 -- -- 0.138 -- 20 677 -- --
182.12 0.63 4.96 -- -- -- -- -- 0.00355 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 132.40 wind 9.0 43200 > th dose dependent rect. 20 1
2 134.24 wind 9.0 43200 > th dose independent rect. 20 1
4 135.13 wind 9.0 43200 < th dose independent rect. 20 1
6 135.64 humidity 90.0 14400 < th dose independent rect. 21 1
7 135.77 precipitation 0.1 43200 > th dose independent rect. 17 1
9 136.14 precipitation 0.1 43200 < th dose independent rect. 17 1
10 136.14 precipitation 0.1 43200 < th dose dependent rect. 17 1
11 136.21 precipitation 0.1 43200 > th dose dependent rect. 17 1
12 136.27 radiation 1.0 43200 < th dose dependent rect. 21 6
13 136.49 humidity 90.0 14400 > th dose independent rect. 21 1
14 136.61 precipitation 0.1 14400 < th dose independent rect. 17 6
15 136.61 precipitation 0.1 14400 < th dose dependent rect. 17 6
16 136.64 precipitation 0.1 14400 > th dose independent rect. 17 6
19 137.14 precipitation 0.1 14400 > th dose dependent rect. 17 7
21 137.17 wind 9.0 43200 > th dose dependent rect. 17 4
36 137.98 wind 9.0 43200 > th dose dependent rect. 17 8
42 138.06 wind 9.0 43200 > th dose dependent rect. 17 10
44 138.11 wind 9.0 43200 > th dose dependent rect. 17 13
47 138.14 humidity 90.0 14400 < th dose independent rect. 18 1
50 138.18 humidity 90.0 14400 < th dose independent rect. 18 4
54 138.24 humidity 90.0 14400 > th dose dependent rect. 21 1
58 138.32 temperature 15.0 10 > th dose dependent rect. 8 22
83 138.78 humidity 80.0 14400 > th dose dependent rect. 18 1
87 138.89 radiation 1.0 43200 < th dose dependent rect. 1 1
88 138.91 humidity 80.0 14400 > th dose independent rect. 17 1
89 138.91 temperature 10.0 270 > th dose dependent rect. 16 23
109 139.15 precipitation 0.1 14400 > th dose dependent rect. 11 12
114 139.22 radiation 1.0 43200 < th dose dependent rect. 24 3
128 139.49 humidity 80.0 43200 > th dose independent rect. 23 1
141 139.67 atmosphere 995.0 43200 < th dose independent rect. 15 1
149 139.69 atmosphere 995.0 43200 < th dose dependent rect. 15 2
163 139.87 atmosphere 995.0 43200 > th dose independent rect. 15 1
181 140.03 wind 9.0 43200 > th dose independent rect. 17 4
183 140.04 precipitation 0.1 14400 < th dose independent rect. 11 12
184 140.04 precipitation 0.1 14400 < th dose dependent rect. 11 12
189 140.09 precipitation 0.1 14400 > th dose independent rect. 11 12
197 140.15 precipitation 0.1 14400 > th dose dependent sin 17 NA
226 140.31 atmosphere 995.0 43200 < th dose independent rect. 14 5
232 140.32 atmosphere 995.0 43200 > th dose independent rect. 14 5
237 140.34 wind 3.0 43200 > th dose dependent rect. 14 18
251 140.41 wind 7.0 43200 < th dose independent rect. 15 1
287 140.73 humidity 60.0 14400 < th dose independent rect. 17 16
308 140.88 wind 7.0 43200 > th dose independent rect. 15 1
336 141.02 temperature 15.0 270 > th dose dependent rect. 7 20
340 141.05 wind 9.0 43200 > th dose independent rect. 17 10
361 141.15 wind 9.0 43200 > th dose independent rect. 17 8
372 141.20 wind 5.0 43200 < th dose independent rect. 14 18
375 141.22 wind 1.0 43200 > th dose dependent rect. 20 1
398 141.31 wind 5.0 43200 < th dose independent rect. 15 16
402 141.33 wind 9.0 43200 > th dose independent rect. 17 14
435 141.44 wind 5.0 43200 < th dose independent rect. 15 12
443 141.49 wind 5.0 43200 > th dose independent rect. 14 18
463 141.58 wind 5.0 43200 > th dose independent rect. 15 11
467 141.59 humidity 80.0 14400 > th dose dependent rect. 17 5
485 141.64 wind 3.0 43200 > th dose dependent sin 14 NA
488 141.65 humidity 80.0 43200 > th dose independent rect. 22 10
492 141.67 wind 9.0 43200 < th dose dependent rect. 20 1
503 141.74 humidity 60.0 14400 < th dose independent rect. 17 3
513 141.77 temperature 30.0 270 < th dose dependent rect. 10 22
528 141.80 wind 3.0 43200 > th dose dependent rect. 17 5
535 141.83 wind 9.0 43200 < th dose dependent rect. 4 17
539 141.84 wind 9.0 43200 < th dose dependent rect. 14 20
548 141.86 wind 1.0 43200 > th dose dependent rect. 4 17
573 141.92 precipitation 0.1 14400 < th dose independent sin 17 NA
577 141.92 wind 9.0 43200 > th dose dependent sin 14 NA
578 141.92 precipitation 0.1 14400 < th dose dependent sin 17 NA
581 141.92 wind 9.0 43200 < th dose dependent rect. 1 20
582 141.93 precipitation 0.1 14400 > th dose independent sin 17 NA
595 141.95 wind 1.0 43200 > th dose dependent rect. 1 20
601 141.97 humidity 60.0 14400 > th dose independent rect. 17 3
612 141.99 precipitation 0.1 14400 > th dose dependent rect. 11 8
618 142.00 humidity 60.0 14400 > th dose independent rect. 17 12
621 142.00 radiation 10.0 43200 < th dose dependent rect. 9 1
636 142.03 humidity 60.0 14400 > th dose independent rect. 17 7
663 142.06 humidity 60.0 14400 > th dose independent rect. 17 10
670 142.07 precipitation 0.1 14400 > th dose dependent rect. 13 6
710 142.16 wind 9.0 43200 < th dose independent rect. 18 9
743 142.22 wind 1.0 43200 > th dose independent rect. 8 2
763 142.25 wind 9.0 43200 < th dose independent rect. 18 6
845 142.35 temperature 10.0 270 > th dose dependent rect. 4 23
870 142.40 precipitation 0.1 4320 > th dose independent rect. 13 5
871 142.40 precipitation 0.1 4320 < th dose independent rect. 13 5
873 142.40 precipitation 0.1 4320 < th dose dependent rect. 13 5
880 142.41 wind 5.0 43200 < th dose independent sin 15 NA
884 142.41 wind 9.0 43200 < th dose dependent rect. 4 22
939 142.48 humidity 60.0 14400 < th dose dependent rect. 17 16
989 142.53 wind 9.0 43200 < th dose dependent rect. 20 23
991 142.54 precipitation 0.1 14400 > th dose dependent rect. 19 4