Os03g0769500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : EF-Hand type domain containing protein.
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Os03g0769500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : EF-Hand type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 172 | 0.616 | 6 | -1.22 | 1.6 | -1.55 | -1.7 | -0.626 | -0.457 | 21.5 | 23.26 | 494 | -- | -- |
| 172.23 | 0.611 | 6.01 | -1.29 | 1.58 | -1.43 | -1.58 | -- | -0.464 | 21.4 | 23.3 | 563 | -- | -- |
| 181.1 | 0.627 | 6.02 | -1.32 | 1.58 | -1.41 | -- | 0.492 | -0.492 | 21.3 | 23.34 | 602 | -- | -- |
| 181.41 | 0.627 | 6.01 | -1.25 | 1.59 | -1.47 | -- | -- | -0.473 | 21.4 | 23.2 | 574 | -- | -- |
| 298.87 | 0.805 | 6.05 | -1.81 | -- | -2.15 | -- | 1.9 | -0.771 | -- | 29.6 | 702 | -- | -- |
| 198.83 | 0.661 | 5.96 | -0.94 | 1.72 | -- | -1.65 | -- | -0.24 | 21.4 | -- | -- | -- | -- |
| 208.71 | 0.677 | 5.96 | -0.879 | 1.73 | -- | -- | -- | -0.237 | 21.3 | -- | -- | -- | -- |
| 301.9 | 0.809 | 6.01 | -1.47 | -- | -2.18 | -- | -- | -0.695 | -- | 28.8 | 689 | -- | -- |
| 217.68 | 0.687 | 5.96 | -- | 1.65 | -0.888 | -- | -- | -0.259 | 21.3 | 23.36 | 524 | -- | -- |
| 382.72 | 0.914 | 5.91 | -0.87 | -- | -- | -- | -- | -0.244 | -- | -- | -- | -- | -- |
| 229.06 | 0.708 | 5.94 | -- | 1.73 | -- | -- | -- | -0.139 | 21.3 | -- | -- | -- | -- |
| 352.74 | 0.875 | 5.95 | -- | -- | -1.64 | -- | -- | -0.424 | -- | 29.49 | 669 | -- | -- |
| 402.69 | 0.937 | 5.89 | -- | -- | -- | -- | -- | -0.147 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 168.37 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 2 |
| 3 | 169.06 | temperature | 25 | 270 | < th | dose dependent | rect. | 5 | 5 |
| 9 | 170.46 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 18 |
| 10 | 170.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 9 |
| 11 | 170.69 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 4 |
| 20 | 171.14 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 5 |
| 21 | 171.21 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 2 |
| 36 | 171.91 | temperature | 25 | 720 | < th | dose dependent | sin | 11 | NA |
| 39 | 171.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 12 |
| 48 | 172.25 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 1 |
| 49 | 172.25 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 14 |
| 54 | 172.32 | radiation | 40 | 270 | > th | dose dependent | sin | 11 | NA |
| 86 | 172.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 109 | 172.96 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 10 |
| 110 | 172.97 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 3 |
| 113 | 173.01 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 12 |
| 114 | 173.01 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 3 |
| 117 | 173.09 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 1 |
| 123 | 173.16 | radiation | 1 | 10 | > th | dose dependent | rect. | 16 | 20 |
| 124 | 173.17 | radiation | 30 | 270 | > th | dose dependent | rect. | 14 | 21 |
| 164 | 173.53 | radiation | 40 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 187 | 173.59 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 193 | 173.61 | radiation | 1 | 10 | > th | dose dependent | rect. | 5 | 7 |
| 214 | 173.68 | radiation | 1 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 245 | 173.80 | temperature | 25 | 270 | < th | dose dependent | sin | 5 | NA |
| 265 | 173.98 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 8 |
| 301 | 174.27 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 19 |
| 332 | 174.49 | temperature | 20 | 720 | < th | dose independent | sin | 10 | NA |
| 337 | 174.51 | temperature | 20 | 720 | < th | dose independent | rect. | 16 | 16 |
| 342 | 174.57 | temperature | 20 | 720 | > th | dose independent | sin | 10 | NA |
| 375 | 174.73 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 21 |
| 450 | 175.04 | radiation | 40 | 10 | < th | dose dependent | rect. | 3 | 13 |
| 470 | 175.11 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 20 |
| 487 | 175.12 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 504 | 175.19 | temperature | 20 | 720 | < th | dose independent | rect. | 12 | 20 |
| 509 | 175.22 | radiation | 1 | 10 | > th | dose dependent | sin | 5 | NA |
| 517 | 175.28 | radiation | 40 | 90 | < th | dose independent | rect. | 3 | 13 |
| 523 | 175.29 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 18 |
| 556 | 175.37 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 587 | 175.44 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 632 | 175.54 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 639 | 175.59 | radiation | 40 | 270 | < th | dose independent | rect. | 1 | 14 |
| 656 | 175.66 | radiation | 30 | 10 | < th | dose independent | rect. | 3 | 13 |
| 728 | 175.92 | temperature | 15 | 270 | > th | dose dependent | sin | 6 | NA |
| 832 | 176.20 | radiation | 40 | 10 | < th | dose dependent | sin | 3 | NA |
| 839 | 176.21 | radiation | 30 | 90 | > th | dose dependent | sin | 5 | NA |
| 866 | 176.24 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 21 |
| 882 | 176.29 | radiation | 40 | 90 | < th | dose independent | rect. | 11 | 22 |
| 967 | 176.58 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 23 |
| 969 | 176.58 | radiation | 30 | 90 | > th | dose dependent | no | NA | NA |
| 970 | 176.58 | radiation | 30 | 90 | > th | dose dependent | rect. | 7 | 9 |