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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0769000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF547 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.05 (0.0484) R2 : 0.205
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.43 (0.167) R2dE : 0.137 R2E : 0.161
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.446 (0.105) R2dN8 : 0.0438 R2N8 : 0.0686
σ : 0.902
deviance : 375.22
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 20.6
memory length : 897
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
356.09 0.887 4.07 -0.393 0.514 1.25 -1.16 0.249 0.418 21.4 20.5 1116 -- --
356.18 0.879 4.07 -0.428 0.502 1.27 -1.12 -- 0.409 21.4 20.4 1096 -- --
360.62 0.884 4.07 -0.372 0.649 1.17 -- 0.2 0.422 21.9 20.4 1332 -- --
360.64 0.884 4.07 -0.413 0.655 1.16 -- -- 0.41 21.9 20.41 1332 -- --
369.97 0.896 4.06 -0.505 -- 1.58 -- -0.344 0.409 -- 20.07 903 -- --
400.65 0.938 4.02 -0.0377 0.718 -- -0.866 -- 0.67 22.3 -- -- -- --
403.59 0.941 4.02 -0.00481 0.721 -- -- -- 0.671 22.5 -- -- -- --
370.18 0.896 4.06 -0.46 -- 1.56 -- -- 0.372 -- 20.3 907 -- --
364.89 0.89 4.06 -- 0.646 1.11 -- -- 0.453 21.8 20.94 1270 -- --
435.51 0.975 4 0.00807 -- -- -- -- 0.674 -- -- -- -- --
403.59 0.94 4.02 -- 0.721 -- -- -- 0.672 22.5 -- -- -- --
375.22 0.902 4.05 -- -- 1.43 -- -- 0.446 -- 20.6 897 -- --
435.51 0.974 4 -- -- -- -- -- 0.674 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 348.43 radiation 10.0 1440 < th dose independent rect. 16 14
2 348.44 temperature 20.0 1440 > th dose dependent rect. 17 1
6 349.99 radiation 10.0 1440 < th dose independent rect. 16 4
9 350.05 radiation 10.0 1440 < th dose independent rect. 16 9
21 351.73 radiation 30.0 1440 < th dose independent rect. 16 16
23 351.78 radiation 40.0 14400 > th dose dependent rect. 15 17
26 352.02 temperature 30.0 1440 < th dose dependent rect. 17 1
58 353.10 radiation 10.0 1440 < th dose dependent rect. 16 14
63 353.42 radiation 10.0 1440 < th dose dependent rect. 16 9
65 353.44 radiation 10.0 1440 < th dose dependent rect. 16 3
83 353.68 temperature 30.0 1440 < th dose dependent rect. 17 5
88 353.76 radiation 30.0 4320 > th dose dependent rect. 7 1
107 353.95 precipitation 0.1 43200 < th dose independent rect. 7 6
108 353.95 precipitation 0.1 43200 < th dose dependent rect. 7 6
112 353.99 radiation 40.0 1440 < th dose dependent rect. 17 3
115 354.00 precipitation 0.1 43200 > th dose independent rect. 7 5
134 354.15 precipitation 0.1 43200 > th dose dependent rect. 7 5
148 354.25 radiation 40.0 1440 < th dose dependent rect. 17 8
171 354.41 precipitation 0.1 43200 < th dose independent rect. 9 2
172 354.41 precipitation 0.1 43200 < th dose dependent rect. 9 2
173 354.42 temperature 20.0 720 > th dose dependent rect. 16 19
174 354.43 precipitation 0.1 43200 < th dose independent rect. 4 12
176 354.43 precipitation 0.1 43200 < th dose dependent rect. 4 12
177 354.44 precipitation 0.1 43200 > th dose independent rect. 4 12
199 354.59 radiation 1.0 1440 > th dose dependent rect. 16 13
222 354.68 radiation 1.0 1440 > th dose dependent rect. 16 3
232 354.69 precipitation 0.1 43200 > th dose independent rect. 9 2
234 354.69 precipitation 0.1 43200 > th dose dependent rect. 9 2
257 354.78 precipitation 0.1 43200 > th dose dependent rect. 4 12
290 355.01 radiation 40.0 14400 > th dose dependent rect. 15 1
309 355.06 precipitation 0.1 43200 < th dose independent rect. 6 9
310 355.06 precipitation 0.1 43200 < th dose dependent rect. 6 9
356 355.38 precipitation 0.1 43200 > th dose dependent rect. 4 9
396 355.80 temperature 20.0 1440 > th dose dependent sin 16 NA
434 356.09 temperature 15.0 1440 > th dose dependent rect. 21 1
459 356.25 temperature 30.0 1440 < th dose dependent rect. 21 1
482 356.38 temperature 25.0 1440 < th dose independent rect. 17 1
484 356.39 radiation 30.0 4320 < th dose independent rect. 6 2
562 356.77 temperature 25.0 1440 < th dose independent rect. 16 3
577 356.84 radiation 30.0 4320 < th dose independent rect. 23 9
619 357.03 radiation 30.0 4320 < th dose independent rect. 3 5
630 357.06 temperature 20.0 1440 > th dose dependent rect. 7 19
637 357.08 radiation 10.0 1440 > th dose independent rect. 16 14
646 357.12 temperature 25.0 1440 > th dose independent rect. 17 1
684 357.24 temperature 25.0 1440 > th dose independent rect. 16 3
699 357.28 radiation 10.0 1440 > th dose independent rect. 16 2
765 357.44 temperature 25.0 1440 < th dose independent rect. 15 7
772 357.46 temperature 20.0 1440 > th dose dependent no NA NA
803 357.58 precipitation 0.1 43200 > th dose independent sin 4 NA
806 357.59 precipitation 0.1 43200 < th dose independent sin 4 NA
807 357.59 precipitation 0.1 43200 < th dose dependent sin 4 NA
816 357.62 temperature 20.0 1440 > th dose dependent rect. 21 23
976 358.09 temperature 20.0 1440 > th dose dependent rect. 7 2