Os03g0768600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os03g0768600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.69 | 0.328 | 14 | -0.486 | 1.01 | 1.32 | 0.468 | -0.667 | -0.536 | 23.1 | 28.7 | 10 | -- | -- |
| 49.3 | 0.327 | 14 | -0.574 | 1.03 | 1.35 | 0.314 | -- | -0.559 | 23 | 28.6 | 11 | -- | -- |
| 49.46 | 0.328 | 14 | -0.506 | 1.01 | 1.36 | -- | -0.407 | -0.543 | 23 | 28.7 | 8 | -- | -- |
| 49.54 | 0.328 | 14 | -0.6 | 1 | 1.36 | -- | -- | -0.553 | 23 | 28.66 | 10 | -- | -- |
| 99.53 | 0.465 | 14 | -0.403 | -- | 2.06 | -- | -0.266 | -0.434 | -- | 29.83 | 2 | -- | -- |
| 74.53 | 0.405 | 14.1 | -0.924 | 1.34 | -- | 0.418 | -- | -0.842 | 24 | -- | -- | -- | -- |
| 75.28 | 0.406 | 14.1 | -0.94 | 1.34 | -- | -- | -- | -0.844 | 23.9 | -- | -- | -- | -- |
| 99.63 | 0.465 | 14 | -0.435 | -- | 2.08 | -- | -- | -0.434 | -- | 29.8 | 2 | -- | -- |
| 58.37 | 0.356 | 14 | -- | 0.94 | 1.61 | -- | -- | -0.447 | 22.7 | 28.7 | 11 | -- | -- |
| 188.41 | 0.641 | 14.1 | -0.899 | -- | -- | -- | -- | -0.826 | -- | -- | -- | -- | -- |
| 98.58 | 0.464 | 14.1 | -- | 1.33 | -- | -- | -- | -0.739 | 23.9 | -- | -- | -- | -- |
| 104.33 | 0.476 | 14 | -- | -- | 2.19 | -- | -- | -0.366 | -- | 29.8 | 2 | -- | -- |
| 209.73 | 0.676 | 14 | -- | -- | -- | -- | -- | -0.726 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.06 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 2 | 48.21 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 5 | 48.52 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 7 | 48.61 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 22 |
| 10 | 48.89 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 12 | 48.97 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 18 | 49.28 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 20 | 49.42 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 26 | 49.60 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 34 | 49.96 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 13 |
| 40 | 50.00 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 13 |
| 69 | 50.13 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 91 | 50.20 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 96 | 50.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 100 | 50.21 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 101 | 50.22 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 102 | 50.22 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 4 |
| 126 | 50.28 | temperature | 10 | 1440 | > th | dose dependent | sin | 9 | NA |
| 152 | 50.32 | temperature | 30 | 1440 | < th | dose dependent | sin | 9 | NA |
| 165 | 50.35 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 4 |
| 177 | 50.37 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 179 | 50.37 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 212 | 50.43 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 4 |
| 325 | 50.63 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 845 | 51.25 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 875 | 51.28 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |