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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0766500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Two-component response regulator ARR1. Splice isoform 2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.76 (0.031) R2 : 0.696
β1 : 1.81 (0.114) R2dD : 0.169 R2D : 0.15
β2 : 2.5 (0.0891) R2dC : 0.646 R2C : 0.357
β3 : -1.71 (0.113) R2dE : 0.194 R2E : -0.133
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0818 (0.0661) R2dN8 : 0.00215 R2N8 : 0.0034
σ : 0.579
deviance : 154.29
__
_____
C
peak time of C : 6.33
E
wheather : temperature
threshold : 19.8
memory length : 234
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 22.7
open length of G : 4.25

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
144.11 0.564 5.75 1.91 2.46 -1.7 -1.41 2.88 -0.0783 6.4 20.59 231 22.8 4.23
152.65 0.575 5.77 1.73 2.47 -1.68 -0.855 -- -0.136 6.4 20.52 224 22.8 4.17
148.23 0.567 5.75 1.94 2.46 -1.74 -- 3.23 -0.0664 6.48 20.92 250 22.8 4.06
154.29 0.579 5.76 1.81 2.5 -1.71 -- -- -0.0818 6.33 19.8 234 22.7 4.25
387.41 0.917 5.79 1.96 -- -0.889 -- 3.12 0.0286 -- 22 44 22.4 5.02
202.69 0.667 5.78 1.64 2.04 -- -1.06 -- -0.158 7.6 -- -- -- --
205.85 0.672 5.78 1.62 2.04 -- -- -- -0.156 7.61 -- -- -- --
385.54 0.918 5.82 1.68 -- -0.827 -- -- -0.0532 -- 20.9 39 21.2 6.27
233.33 0.711 5.76 -- 2.46 -1.59 -- -- -0.165 6.28 20.6 220 22.7 4.18
428.96 0.968 5.83 1.64 -- -- -- -- -0.125 -- -- -- -- --
274.66 0.775 5.82 -- 2.05 -- -- -- -0.336 7.56 -- -- -- --
452.16 0.99 5.84 -- -- -0.85 -- -- -0.17 -- 20.91 25 20.5 6.77
500.28 1.04 5.87 -- -- -- -- -- -0.308 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 145.56 temperature 15.0 270 > th dose dependent rect. 22 5
2 147.17 temperature 15.0 270 > th dose dependent rect. 23 3
3 147.96 temperature 20.0 270 > th dose independent rect. 22 5
4 148.00 temperature 20.0 270 > th dose independent rect. 23 3
18 152.76 temperature 20.0 90 > th dose dependent rect. 1 3
25 154.49 temperature 20.0 90 > th dose independent rect. 1 3
42 156.73 temperature 20.0 90 > th dose independent rect. 11 17
43 156.95 temperature 20.0 10 > th dose independent rect. 24 5
44 156.95 temperature 20.0 10 > th dose dependent rect. 1 3
61 158.94 wind 3.0 10 < th dose dependent rect. 24 5
86 160.58 temperature 10.0 90 > th dose dependent rect. 11 17
120 162.72 wind 9.0 270 < th dose independent rect. 2 21
121 162.74 temperature 10.0 270 > th dose dependent rect. 8 19
124 162.82 atmosphere 1000.0 270 > th dose independent rect. 23 3
131 163.39 wind 9.0 270 < th dose independent rect. 3 19
136 163.61 atmosphere 995.0 270 > th dose dependent rect. 23 3
140 163.65 atmosphere 995.0 270 > th dose dependent rect. 24 1
142 163.70 atmosphere 1010.0 270 < th dose independent rect. 23 3
148 163.90 atmosphere 1000.0 270 > th dose independent rect. 22 5
149 163.90 precipitation 0.1 270 < th dose independent rect. 2 21
151 163.90 precipitation 0.1 270 < th dose dependent rect. 2 21
152 163.93 humidity 50.0 90 > th dose dependent rect. 4 21
154 163.97 humidity 50.0 30 > th dose dependent rect. 5 19
163 164.17 precipitation 0.1 270 < th dose independent rect. 3 19
164 164.17 precipitation 0.1 270 < th dose dependent rect. 3 19
168 164.29 precipitation 0.1 270 < th dose independent rect. 23 3
169 164.29 precipitation 0.1 270 < th dose dependent rect. 23 3
170 164.32 humidity 80.0 90 > th dose independent rect. 1 3
175 164.52 temperature 30.0 270 < th dose independent rect. 23 3
176 164.52 humidity 50.0 270 > th dose independent rect. 23 3
180 164.52 radiation 1.0 270 < th dose independent rect. 23 3
185 164.52 temperature 10.0 270 > th dose independent rect. 2 21
186 164.52 radiation 1.0 270 < th dose dependent rect. 23 3
191 164.54 atmosphere 1010.0 270 < th dose independent rect. 22 5
192 164.56 atmosphere 1000.0 30 > th dose independent rect. 24 5
197 164.61 wind 9.0 270 < th dose independent rect. 23 3
204 164.80 precipitation 0.1 270 < th dose independent rect. 22 5
206 164.80 precipitation 0.1 270 < th dose dependent rect. 22 5
212 164.86 atmosphere 1000.0 270 > th dose independent rect. 24 1
216 164.93 radiation 1.0 30 > th dose independent sin 7 NA
218 164.94 temperature 30.0 270 < th dose independent rect. 22 5
219 164.94 humidity 50.0 270 > th dose independent rect. 22 5
223 164.94 radiation 1.0 270 < th dose independent rect. 22 5
228 164.94 temperature 10.0 270 > th dose independent rect. 3 19
229 164.94 radiation 1.0 270 < th dose dependent rect. 22 5
235 164.96 radiation 1.0 30 < th dose independent sin 7 NA
240 165.06 wind 9.0 270 < th dose independent rect. 22 5
242 165.09 humidity 50.0 30 > th dose dependent rect. 24 5
252 165.31 wind 9.0 270 < th dose independent rect. 1 23
259 165.44 wind 9.0 30 < th dose independent rect. 5 19
271 165.79 wind 9.0 30 < th dose dependent rect. 24 5
278 165.92 atmosphere 1010.0 30 < th dose independent rect. 24 5
282 165.98 radiation 1.0 30 < th dose dependent rect. 24 5
286 166.01 temperature 30.0 30 < th dose independent rect. 24 5
287 166.01 humidity 50.0 30 > th dose independent rect. 24 5
291 166.01 radiation 1.0 30 < th dose independent rect. 24 5
296 166.01 temperature 10.0 30 > th dose independent rect. 5 19
306 166.10 wind 9.0 30 < th dose independent rect. 24 5
318 166.39 wind 1.0 270 > th dose independent rect. 24 1
319 166.39 radiation 1.0 30 < th dose independent rect. 24 14
324 166.42 precipitation 0.1 30 < th dose independent rect. 24 5
325 166.42 precipitation 0.1 30 < th dose dependent rect. 24 5
331 166.46 humidity 80.0 270 > th dose independent rect. 24 1
332 166.46 precipitation 0.1 270 < th dose independent rect. 24 1
333 166.46 precipitation 0.1 270 < th dose dependent rect. 24 1
335 166.50 radiation 1.0 30 < th dose independent rect. 24 12
338 166.53 atmosphere 1010.0 270 < th dose independent rect. 24 1
344 166.58 wind 9.0 270 < th dose independent rect. 24 1
346 166.58 temperature 30.0 270 < th dose independent rect. 24 1
347 166.58 humidity 50.0 270 > th dose independent rect. 24 1
351 166.58 radiation 1.0 270 < th dose independent rect. 24 1
356 166.58 temperature 10.0 270 > th dose independent rect. 1 23
357 166.58 radiation 1.0 270 < th dose dependent rect. 24 1
363 166.60 atmosphere 995.0 30 > th dose independent rect. 5 19
364 166.60 wind 9.0 30 < th dose dependent rect. 5 19
365 166.64 precipitation 0.1 30 < th dose independent rect. 5 19
366 166.64 precipitation 0.1 30 < th dose dependent rect. 5 19
367 166.66 radiation 1.0 30 < th dose independent rect. 24 8
424 166.95 temperature 10.0 90 > th dose independent rect. 1 3
426 166.95 temperature 30.0 90 < th dose independent rect. 1 3
427 166.95 humidity 50.0 90 > th dose independent rect. 1 3
431 166.95 atmosphere 1010.0 90 < th dose independent rect. 1 3
433 166.95 radiation 1.0 90 < th dose independent rect. 1 3
440 166.95 radiation 1.0 90 < th dose dependent rect. 1 3
446 166.99 wind 9.0 90 < th dose independent rect. 1 3
474 167.08 precipitation 0.1 90 < th dose independent rect. 1 3
476 167.08 precipitation 0.1 90 < th dose dependent rect. 1 3
482 167.14 humidity 80.0 90 > th dose independent rect. 2 1
513 167.38 atmosphere 995.0 270 > th dose independent rect. 3 19
522 167.62 precipitation 0.1 270 < th dose independent rect. 1 23
523 167.62 precipitation 0.1 270 < th dose dependent rect. 1 23
531 167.69 wind 7.0 30 < th dose dependent rect. 5 6
532 167.70 wind 7.0 270 < th dose independent rect. 17 14
540 167.74 wind 3.0 10 < th dose dependent rect. 22 7
553 167.88 wind 5.0 90 < th dose independent rect. 4 7
559 167.99 atmosphere 1015.0 270 < th dose independent rect. 3 19
563 168.02 radiation 10.0 10 < th dose dependent sin 8 NA
572 168.15 atmosphere 995.0 270 > th dose independent rect. 2 21
577 168.23 wind 1.0 270 > th dose independent rect. 23 3
595 168.39 radiation 1.0 30 < th dose dependent rect. 24 14
600 168.43 humidity 60.0 90 > th dose independent rect. 4 20
605 168.47 humidity 50.0 10 > th dose independent rect. 5 19
613 168.51 radiation 1.0 30 < th dose dependent rect. 24 12
617 168.54 wind 9.0 90 < th dose dependent rect. 1 3
618 168.57 wind 1.0 10 < th dose independent rect. 24 5
654 168.66 radiation 1.0 30 < th dose dependent rect. 24 8
685 168.77 wind 1.0 10 > th dose independent sin 16 NA
695 168.86 humidity 50.0 270 > th dose dependent rect. 24 1
696 168.87 wind 1.0 10 < th dose independent rect. 11 18
710 168.95 atmosphere 1015.0 30 < th dose independent rect. 5 19
730 169.04 temperature 20.0 270 > th dose independent rect. 22 17
734 169.05 wind 9.0 270 < th dose dependent rect. 24 1
884 169.99 humidity 60.0 90 > th dose dependent rect. 2 1
891 170.04 humidity 50.0 270 > th dose independent rect. 2 21
907 170.12 wind 1.0 270 > th dose independent rect. 22 5
912 170.13 humidity 50.0 270 > th dose dependent rect. 22 5
927 170.23 wind 5.0 270 < th dose dependent rect. 5 1
936 170.32 wind 3.0 270 < th dose independent rect. 5 1
941 170.37 temperature 10.0 1440 > th dose independent rect. 1 4
944 170.37 temperature 30.0 1440 < th dose independent rect. 1 4
948 170.37 humidity 50.0 1440 > th dose independent rect. 1 4
957 170.37 atmosphere 995.0 1440 > th dose independent rect. 1 4
958 170.37 radiation 20.0 1440 < th dose independent rect. 1 4
970 170.37 temperature 10.0 1440 > th dose independent rect. 5 20
978 170.42 temperature 30.0 30 < th dose independent rect. 5 19
983 170.44 radiation 1.0 270 < th dose independent rect. 3 19
997 170.60 radiation 1.0 270 < th dose dependent rect. 3 19