Os03g0765200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Signal peptidase I (Leader peptidase I).
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Os03g0765200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Signal peptidase I (Leader peptidase I).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.98 | 0.335 | 9.96 | 0.899 | 1.54 | -0.227 | 0.249 | 3.19 | 0.0112 | 10.6 | 18.4 | 3906 | -- | -- |
| 59.35 | 0.359 | 10.1 | 0.301 | 1.58 | -0.43 | -0.08 | -- | -0.0964 | 10.6 | 14.63 | 21565 | -- | -- |
| 51.21 | 0.333 | 9.96 | 0.893 | 1.54 | -0.225 | -- | 3.13 | 0.00829 | 10.6 | 18.3 | 3963 | -- | -- |
| 58.84 | 0.357 | 10.1 | 0.266 | 1.54 | -0.373 | -- | -- | -0.127 | 10.6 | 8.782 | 21586 | -- | -- |
| 191.95 | 0.649 | 10.2 | -0.159 | -- | 0.851 | -- | 0.483 | -0.389 | -- | 18.3 | 3963 | -- | -- |
| 60.93 | 0.366 | 10.1 | -0.0389 | 1.55 | -- | 0.102 | -- | -0.267 | 10.6 | -- | -- | -- | -- |
| 60.97 | 0.366 | 10.1 | -0.0347 | 1.55 | -- | -- | -- | -0.267 | 10.6 | -- | -- | -- | -- |
| 192.2 | 0.649 | 10.2 | -0.238 | -- | 0.87 | -- | -- | -0.412 | -- | 18.3 | 3963 | -- | -- |
| 59.76 | 0.36 | 10.1 | -- | 1.54 | -0.197 | -- | -- | -0.208 | 10.6 | 8.822 | 21536 | -- | -- |
| 208.04 | 0.674 | 10.1 | -0.0637 | -- | -- | -- | -- | -0.275 | -- | -- | -- | -- | -- |
| 61.01 | 0.365 | 10.1 | -- | 1.55 | -- | -- | -- | -0.263 | 10.6 | -- | -- | -- | -- |
| 193.63 | 0.65 | 10.2 | -- | -- | 0.813 | -- | -- | -0.378 | -- | 18.3 | 3963 | -- | -- |
| 208.15 | 0.673 | 10.1 | -- | -- | -- | -- | -- | -0.268 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.76 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 48.45 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 3 | 48.46 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 4 | 48.56 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 8 | 48.69 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 9 | 48.70 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 47 | 49.28 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 50 | 49.30 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 98 | 49.56 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 145 | 49.75 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 151 | 49.80 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 177 | 49.92 | atmosphere | 1005 | 720 | < th | dose independent | rect. | 19 | 6 |
| 180 | 49.93 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 183 | 49.94 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 21 |
| 191 | 49.97 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 17 |
| 193 | 49.98 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 200 | 49.98 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 18 | 20 |
| 245 | 50.11 | atmosphere | 995 | 43200 | < th | dose independent | sin | 6 | NA |
| 253 | 50.13 | atmosphere | 995 | 43200 | > th | dose independent | sin | 6 | NA |
| 277 | 50.18 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 17 |
| 287 | 50.21 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 9 |
| 327 | 50.32 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 345 | 50.37 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 368 | 50.43 | atmosphere | 1005 | 720 | < th | dose independent | rect. | 21 | 2 |
| 435 | 50.57 | temperature | 20 | 270 | > th | dose independent | sin | 11 | NA |
| 461 | 50.61 | radiation | 20 | 14400 | < th | dose independent | rect. | 22 | 8 |
| 507 | 50.67 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 17 | NA |
| 523 | 50.70 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 553 | 50.75 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 9 | NA |
| 587 | 50.82 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 592 | 50.82 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 21 | 13 |
| 602 | 50.83 | temperature | 20 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 607 | 50.84 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 612 | 50.85 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 624 | 50.86 | radiation | 20 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 631 | 50.87 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 660 | 50.91 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 2 | 9 |
| 670 | 50.92 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 1 | 11 |
| 686 | 50.93 | temperature | 10 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 700 | 50.95 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 2 | 9 |
| 721 | 50.96 | atmosphere | 995 | 43200 | < th | dose dependent | no | NA | NA |
| 722 | 50.96 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 2 |
| 725 | 50.96 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 21 | 21 |
| 745 | 50.98 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 746 | 50.98 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 789 | 51.00 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 791 | 51.01 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 807 | 51.02 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 20 | 2 |
| 808 | 51.02 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 809 | 51.02 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 817 | 51.02 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 821 | 51.03 | temperature | 10 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 822 | 51.03 | temperature | 10 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 823 | 51.03 | wind | 9 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 863 | 51.05 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 877 | 51.07 | humidity | 60 | 14400 | > th | dose independent | rect. | 23 | 9 |
| 884 | 51.07 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 21 |
| 891 | 51.08 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 897 | 51.09 | radiation | 10 | 1440 | < th | dose independent | sin | 19 | NA |
| 899 | 51.09 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 912 | 51.09 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 1 | 23 |
| 926 | 51.10 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 928 | 51.10 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 14 |
| 991 | 51.15 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |