FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0765000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Serine/threonine-protein kinase 12 (EC 2.7.1.37) (Aurora-B) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.01 (0.0291) R2 : 0.189
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.67 (0.551) R2dE : 0.188 R2E : 0.187
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0648 (0.0613) R2dN8 : 0.00256 R2N8 : 0.00101
σ : 0.547
deviance : 138.1
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 8.468
memory length : 79
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.1
open length of G : 2.92

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
135.73 0.547 3.02 -0.424 0.0649 1.05 0.317 -13.3 0.035 11.6 0.89 87 18.1 2.85
137.9 0.547 3.04 -0.214 0.0632 4.48 0.435 -- -0.0456 11.2 10 71 18.1 0.783
135.86 0.543 3.02 -0.429 0.105 1.01 -- -13.3 0.0285 15 0.8968 85 18 4.76
136.33 0.544 3.01 -0.217 0.0904 5.59 -- -- 0.0422 14.3 8.677 71 18.1 2.24
136.42 0.544 3.02 -0.416 -- 1.03 -- -13.4 0.0355 -- 0.9899 86 18 5.01
165.54 0.603 3.02 -0.317 0.0686 -- -0.863 -- 0.0183 19.5 -- -- -- --
167.18 0.605 3.02 -0.294 0.11 -- -- -- 0.0187 16.3 -- -- -- --
136.82 0.545 3.01 -0.221 -- 5.59 -- -- 0.04 -- 8.68 72 18.1 2.49
137.57 0.546 3.01 -- 0.0944 5.67 -- -- 0.0666 14.3 8.447 77 18.1 2.41
167.83 0.605 3.02 -0.298 -- -- -- -- 0.0158 -- -- -- -- --
169.45 0.609 3.01 -- 0.116 -- -- -- 0.0514 16.2 -- -- -- --
138.1 0.547 3.01 -- -- 5.67 -- -- 0.0648 -- 8.468 79 18.1 2.92
170.18 0.609 3.01 -- -- -- -- -- 0.0489 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 143.04 radiation 1.0 90 > th dose dependent rect. 18 1
11 143.07 wind 7.0 90 > th dose independent rect. 18 1
12 143.20 wind 7.0 90 > th dose dependent rect. 18 1
16 146.69 wind 3.0 10 > th dose dependent rect. 20 1
18 147.69 atmosphere 1005.0 90 > th dose dependent rect. 19 1
21 148.63 wind 9.0 270 > th dose dependent rect. 16 18
22 149.34 wind 5.0 10 > th dose independent rect. 20 1
25 149.67 radiation 1.0 90 > th dose independent rect. 18 1
36 150.19 wind 9.0 270 > th dose independent rect. 16 18
37 150.21 wind 9.0 270 > th dose dependent rect. 14 20
40 150.59 wind 9.0 270 > th dose dependent sin 12 NA
41 150.80 temperature 15.0 90 > th dose independent rect. 21 22
43 151.02 wind 9.0 270 > th dose independent rect. 14 20
45 151.11 wind 9.0 270 > th dose dependent rect. 12 22
46 151.15 atmosphere 1005.0 30 > th dose independent rect. 19 2
50 151.59 humidity 90.0 10 < th dose dependent rect. 20 1
51 151.59 atmosphere 1005.0 270 > th dose dependent rect. 17 3
53 151.76 wind 9.0 270 > th dose independent rect. 12 22
54 151.77 atmosphere 1005.0 270 > th dose dependent rect. 16 5
58 152.05 wind 9.0 270 > th dose dependent sin 16 NA
64 152.44 atmosphere 995.0 30 > th dose dependent rect. 19 18
65 152.47 wind 9.0 270 > th dose dependent rect. 16 3
69 152.49 wind 9.0 270 < th dose independent sin 12 NA
70 152.51 wind 9.0 270 > th dose independent sin 12 NA
107 153.13 atmosphere 1000.0 10 > th dose dependent rect. 19 6
110 153.20 wind 9.0 30 < th dose independent rect. 21 23
113 153.24 wind 9.0 270 < th dose independent sin 15 NA
118 153.30 wind 9.0 270 > th dose independent sin 16 NA
137 153.62 temperature 30.0 10 < th dose dependent rect. 20 1
138 153.63 wind 7.0 10 < th dose independent rect. 20 1
139 153.63 wind 7.0 90 > th dose independent rect. 18 6
142 153.66 wind 9.0 270 > th dose dependent rect. 11 12
153 153.67 wind 9.0 270 > th dose dependent rect. 11 8
158 153.69 wind 9.0 270 > th dose independent rect. 16 2
159 153.74 wind 9.0 270 > th dose dependent rect. 14 5
174 153.74 temperature 10.0 90 > th dose dependent rect. 21 22
176 153.76 temperature 20.0 10 > th dose independent rect. 20 1
177 153.76 humidity 90.0 10 < th dose independent rect. 20 1
205 153.84 temperature 10.0 10 > th dose independent rect. 20 1
207 153.84 temperature 30.0 10 < th dose independent rect. 20 1
208 153.84 humidity 50.0 10 > th dose independent rect. 20 1
211 153.84 atmosphere 995.0 10 > th dose independent rect. 20 1
212 153.84 atmosphere 1010.0 10 < th dose independent rect. 20 1
214 153.84 radiation 1.0 10 < th dose independent rect. 20 1
219 153.84 precipitation 0.1 10 < th dose independent rect. 20 1
220 153.84 temperature 10.0 10 > th dose independent rect. 21 23
221 153.84 radiation 1.0 10 < th dose dependent rect. 20 1
226 153.84 precipitation 0.1 10 < th dose dependent rect. 20 1
242 153.89 atmosphere 1015.0 90 < th dose dependent rect. 21 22
255 154.02 atmosphere 1015.0 10 < th dose dependent rect. 20 1
258 154.04 wind 9.0 270 > th dose independent rect. 11 8
259 154.04 wind 9.0 270 > th dose independent rect. 11 12
279 154.21 temperature 10.0 10 > th dose dependent rect. 20 1
281 154.26 atmosphere 995.0 270 > th dose dependent rect. 16 21
282 154.29 atmosphere 995.0 10 > th dose independent rect. 21 23
286 154.34 wind 9.0 270 > th dose independent rect. 14 5
328 154.45 atmosphere 995.0 10 > th dose dependent rect. 19 21
347 154.55 atmosphere 1005.0 270 > th dose independent rect. 17 4
352 154.59 humidity 50.0 10 > th dose dependent rect. 20 1
400 154.75 atmosphere 1010.0 30 < th dose independent rect. 21 22
411 154.86 radiation 10.0 43200 < th dose dependent rect. 21 1
418 154.90 atmosphere 1015.0 90 < th dose dependent rect. 13 22
431 154.97 atmosphere 1015.0 10 < th dose dependent rect. 13 21
450 155.00 atmosphere 1015.0 90 < th dose dependent rect. 13 14
487 155.08 wind 7.0 90 < th dose independent rect. 13 6
494 155.09 atmosphere 1005.0 10 > th dose dependent sin 17 NA
512 155.14 radiation 1.0 14400 < th dose dependent rect. 20 6
539 155.30 wind 9.0 10 < th dose dependent rect. 20 1
540 155.31 atmosphere 1010.0 10 < th dose dependent sin 16 NA
542 155.32 atmosphere 995.0 720 > th dose dependent rect. 9 12
558 155.36 temperature 10.0 1440 > th dose independent rect. 14 6
561 155.36 temperature 10.0 1440 > th dose independent rect. 20 18
564 155.36 atmosphere 995.0 1440 > th dose independent rect. 20 18
616 155.59 temperature 15.0 720 > th dose independent rect. 21 12
620 155.61 atmosphere 1005.0 30 > th dose independent rect. 19 6
643 155.71 temperature 15.0 90 > th dose independent rect. 1 17
674 155.80 atmosphere 1000.0 10 > th dose dependent rect. 19 12
691 155.85 wind 1.0 90 > th dose independent rect. 13 6
694 155.86 temperature 10.0 1440 > th dose independent rect. 21 1
697 155.86 temperature 30.0 1440 < th dose independent rect. 21 1
701 155.86 humidity 50.0 1440 > th dose independent rect. 21 1
707 155.86 atmosphere 995.0 1440 > th dose independent rect. 21 1
708 155.86 radiation 1.0 1440 < th dose independent rect. 21 1
728 155.86 humidity 50.0 90 > th dose independent rect. 19 18
729 155.86 temperature 10.0 1440 > th dose independent rect. 22 23
735 155.88 temperature 10.0 90 > th dose independent rect. 13 6
737 155.88 atmosphere 1010.0 90 < th dose independent rect. 13 6
739 155.88 temperature 10.0 90 > th dose independent rect. 19 18
740 155.88 atmosphere 995.0 90 > th dose independent rect. 19 18
752 155.93 precipitation 0.1 90 < th dose independent rect. 19 18
756 155.93 precipitation 0.1 90 < th dose dependent rect. 19 18
764 155.95 precipitation 0.1 90 < th dose independent rect. 13 6
766 155.95 precipitation 0.1 90 < th dose dependent rect. 13 6
767 155.95 temperature 10.0 30 > th dose dependent rect. 1 18
776 155.99 precipitation 0.1 10 < th dose independent rect. 21 23
777 155.99 precipitation 0.1 10 < th dose dependent rect. 21 23
824 156.15 atmosphere 1015.0 10 < th dose dependent rect. 13 16
825 156.15 temperature 10.0 270 > th dose dependent rect. 21 20
837 156.19 atmosphere 995.0 90 > th dose independent rect. 13 6
887 156.30 wind 7.0 270 < th dose independent rect. 13 3
898 156.31 atmosphere 1005.0 10 > th dose dependent rect. 10 15
920 156.36 temperature 30.0 270 < th dose dependent rect. 7 16
970 156.48 atmosphere 1010.0 10 < th dose dependent rect. 13 19
974 156.49 atmosphere 995.0 720 > th dose dependent rect. 9 18
977 156.50 wind 7.0 90 < th dose independent rect. 1 18
984 156.51 temperature 15.0 1440 > th dose independent rect. 11 2
997 156.52 wind 1.0 90 > th dose dependent rect. 18 19