Os03g0763000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Casein kinase II alpha subunit.
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Os03g0763000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Casein kinase II alpha subunit.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.57 | 0.284 | 9.21 | -0.743 | 0.692 | 0.663 | -0.884 | 3.18 | -0.439 | 13.5 | 8.389 | 109 | -- | -- |
| 38.49 | 0.291 | 9.27 | -1.18 | 0.611 | 0.723 | -0.265 | -- | -0.552 | 13.7 | 24.1 | 111 | -- | -- |
| 38.8 | 0.29 | 9.22 | -0.801 | 0.764 | 0.483 | -- | 2.59 | -0.444 | 13.6 | 6.37 | 244 | -- | -- |
| 38.75 | 0.292 | 9.27 | -1.19 | 0.621 | 0.7 | -- | -- | -0.551 | 13.8 | 24.1 | 111 | -- | -- |
| 53.99 | 0.342 | 9.29 | -1.25 | -- | 1.29 | -- | 0.346 | -0.616 | -- | 24.09 | 6 | -- | -- |
| 46.56 | 0.32 | 9.25 | -1.07 | 0.898 | -- | -0.0134 | -- | -0.466 | 14.1 | -- | -- | -- | -- |
| 46.56 | 0.32 | 9.25 | -1.07 | 0.899 | -- | -- | -- | -0.466 | 14.1 | -- | -- | -- | -- |
| 53.98 | 0.342 | 9.29 | -1.3 | -- | 1.29 | -- | -- | -0.63 | -- | 24.1 | 7 | -- | -- |
| 74.24 | 0.403 | 9.23 | -- | 0.761 | 0.407 | -- | -- | -0.381 | 14 | 24.55 | 78 | -- | -- |
| 94.93 | 0.455 | 9.26 | -1.11 | -- | -- | -- | -- | -0.488 | -- | -- | -- | -- | -- |
| 76.92 | 0.41 | 9.22 | -- | 0.919 | -- | -- | -- | -0.347 | 14.1 | -- | -- | -- | -- |
| 97.2 | 0.461 | 9.25 | -- | -- | 1.1 | -- | -- | -0.447 | -- | 24.55 | 78 | -- | -- |
| 127.48 | 0.527 | 9.23 | -- | -- | -- | -- | -- | -0.365 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.50 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 2 | 30.72 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 138 | 33.76 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 142 | 33.79 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 152 | 33.94 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 167 | 34.09 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 186 | 34.26 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 19 |
| 188 | 34.29 | temperature | 10 | 10 | > th | dose dependent | sin | 23 | NA |
| 191 | 34.33 | temperature | 30 | 90 | < th | dose dependent | sin | 2 | NA |
| 222 | 34.58 | temperature | 30 | 10 | < th | dose dependent | sin | 1 | NA |
| 280 | 35.02 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 338 | 35.45 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 14 |
| 339 | 35.46 | radiation | 30 | 270 | < th | dose dependent | rect. | 1 | 12 |
| 341 | 35.47 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 397 | 35.75 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 19 |
| 416 | 35.80 | temperature | 25 | 270 | > th | dose dependent | sin | 8 | NA |
| 430 | 35.87 | radiation | 20 | 270 | < th | dose dependent | sin | 5 | NA |
| 442 | 35.92 | temperature | 15 | 270 | > th | dose independent | rect. | 15 | 15 |
| 465 | 35.99 | radiation | 20 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 486 | 36.06 | radiation | 10 | 270 | < th | dose independent | rect. | 1 | 13 |
| 526 | 36.19 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 551 | 36.28 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 629 | 36.49 | temperature | 25 | 270 | < th | dose independent | sin | 6 | NA |
| 660 | 36.60 | radiation | 10 | 270 | < th | dose independent | rect. | 1 | 16 |
| 663 | 36.60 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 8 | 19 |
| 669 | 36.61 | temperature | 25 | 90 | > th | dose dependent | sin | 3 | NA |
| 691 | 36.65 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 710 | 36.70 | wind | 7 | 270 | < th | dose independent | rect. | 5 | 22 |
| 726 | 36.74 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 10 | 10 |
| 728 | 36.74 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 8 | 18 |
| 731 | 36.75 | radiation | 10 | 270 | < th | dose independent | sin | 6 | NA |
| 770 | 36.82 | radiation | 10 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 791 | 36.88 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 793 | 36.89 | radiation | 1 | 270 | > th | dose independent | sin | 2 | NA |
| 807 | 36.91 | radiation | 1 | 270 | > th | dose independent | rect. | 17 | 22 |
| 811 | 36.91 | radiation | 40 | 270 | < th | dose dependent | rect. | 13 | 17 |
| 815 | 36.92 | wind | 7 | 270 | < th | dose independent | rect. | 6 | 20 |
| 818 | 36.93 | atmosphere | 995 | 270 | > th | dose independent | rect. | 15 | 15 |
| 847 | 36.97 | temperature | 25 | 10 | > th | dose dependent | sin | 1 | NA |
| 856 | 36.98 | radiation | 40 | 270 | < th | dose dependent | rect. | 11 | 19 |
| 857 | 36.98 | radiation | 40 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 859 | 36.99 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 20 |
| 885 | 37.02 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 888 | 37.03 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 949 | 37.12 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 22 |
| 964 | 37.15 | radiation | 20 | 270 | < th | dose independent | rect. | 15 | 15 |