FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0762800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.83 (0.0327) R2 : 0.158
β1 : 1.04 (0.12) R2dD : 0.145 R2D : 0.153
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0988 (0.0697) R2dN8 : 0.00497 R2N8 : 0.0128
σ : 0.613
deviance : 172.08
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
150.08 0.576 3.8 1.21 0.232 0.966 1.12 0.461 0.0826 19.2 25.7 12 -- --
150.34 0.571 3.79 1.28 0.257 0.92 1.14 -- 0.1 19.2 27.05 17 -- --
153.3 0.577 3.81 1.19 0.242 0.929 -- 0.492 0.0719 19.7 25.7 14 -- --
153.75 0.578 3.79 1.26 0.23 0.919 -- -- 0.11 20 25.7 16 -- --
156.13 0.582 3.79 1.17 -- 0.977 -- 0.564 0.0682 -- 25.22 12 -- --
163.47 0.599 3.83 1.06 0.339 -- 0.694 -- -0.0974 21.9 -- -- -- --
165.06 0.602 3.84 1.03 0.337 -- -- -- -0.101 22.7 -- -- -- --
156.69 0.583 3.78 1.25 -- 0.932 -- -- 0.0892 -- 25.4 12 -- --
190.39 0.646 3.84 -- 0.28 0.409 -- -- -0.14 22.2 25.6 10 -- --
172.08 0.613 3.83 1.04 -- -- -- -- -0.0988 -- -- -- -- --
193.15 0.65 3.86 -- 0.345 -- -- -- -0.216 22.9 -- -- -- --
194.79 0.652 3.83 -- -- 0.543 -- -- -0.116 -- 25.6 10 -- --
200.57 0.661 3.85 -- -- -- -- -- -0.214 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 136.60 precipitation 0.1 10 < th dose independent rect. 3 23
2 136.60 precipitation 0.1 10 < th dose dependent rect. 3 23
3 136.68 temperature 10.0 30 > th dose dependent rect. 3 23
5 137.78 radiation 1.0 43200 < th dose dependent rect. 3 1
9 140.75 atmosphere 1005.0 90 > th dose dependent rect. 2 1
11 141.46 temperature 25.0 90 > th dose dependent rect. 2 1
12 141.49 atmosphere 1005.0 10 > th dose dependent rect. 2 1
13 141.50 atmosphere 1005.0 10 > th dose independent rect. 2 1
17 141.64 wind 3.0 30 < th dose independent rect. 2 1
18 141.65 temperature 30.0 30 < th dose dependent rect. 2 1
23 141.69 wind 7.0 30 < th dose dependent rect. 2 1
27 141.71 temperature 25.0 30 < th dose independent rect. 2 1
29 141.72 temperature 10.0 30 > th dose independent rect. 2 1
32 141.72 humidity 50.0 30 > th dose independent rect. 2 1
35 141.72 atmosphere 995.0 30 > th dose independent rect. 2 1
36 141.72 atmosphere 1010.0 30 < th dose independent rect. 2 1
38 141.72 radiation 1.0 30 < th dose independent rect. 2 1
43 141.72 precipitation 0.1 30 < th dose independent rect. 2 1
44 141.72 temperature 10.0 30 > th dose independent rect. 3 23
45 141.72 radiation 1.0 30 < th dose dependent rect. 2 1
50 141.72 precipitation 0.1 30 < th dose dependent rect. 2 1
52 141.74 temperature 25.0 90 > th dose independent rect. 2 1
53 141.74 wind 1.0 30 < th dose dependent rect. 2 1
56 141.76 temperature 10.0 30 > th dose dependent rect. 2 1
58 141.78 humidity 50.0 30 > th dose dependent rect. 2 1
59 141.79 wind 1.0 30 > th dose independent rect. 2 1
63 141.83 atmosphere 1015.0 30 < th dose dependent rect. 2 1
73 141.93 humidity 90.0 30 > th dose independent rect. 2 1
79 142.02 atmosphere 995.0 30 > th dose independent rect. 3 23
115 142.24 wind 9.0 1440 < th dose independent rect. 3 1
116 142.24 temperature 10.0 1440 > th dose independent rect. 3 1
119 142.24 temperature 30.0 1440 < th dose independent rect. 3 1
123 142.24 humidity 50.0 1440 > th dose independent rect. 3 1
132 142.24 atmosphere 995.0 1440 > th dose independent rect. 3 1
133 142.24 radiation 1.0 1440 < th dose independent rect. 3 1
153 142.24 temperature 10.0 1440 > th dose independent rect. 4 23
156 142.24 radiation 1.0 1440 < th dose dependent rect. 3 1
188 143.39 wind 9.0 30 < th dose independent rect. 3 23
207 145.68 atmosphere 1015.0 30 < th dose independent rect. 3 23
221 147.74 humidity 50.0 30 > th dose independent rect. 3 23
230 148.17 wind 1.0 10 < th dose independent rect. 23 4
233 148.43 wind 1.0 10 < th dose independent rect. 21 6
252 148.94 temperature 30.0 10 < th dose dependent rect. 6 22
262 149.20 temperature 30.0 90 < th dose dependent rect. 5 23
266 149.34 wind 3.0 10 < th dose dependent rect. 23 4
288 149.88 humidity 90.0 90 < th dose independent rect. 2 1
289 149.88 temperature 30.0 30 < th dose dependent rect. 23 19
299 150.07 wind 3.0 43200 > th dose independent rect. 1 1
301 150.08 temperature 30.0 10 < th dose dependent rect. 23 23
302 150.15 temperature 30.0 10 < th dose dependent rect. 23 21
307 150.20 temperature 30.0 30 < th dose dependent rect. 1 23
308 150.26 temperature 30.0 10 < th dose dependent rect. 19 23
315 150.32 temperature 15.0 10 > th dose dependent rect. 8 23
328 150.40 temperature 30.0 10 < th dose dependent rect. 13 23
341 150.54 temperature 25.0 10 < th dose dependent no NA NA
366 150.55 temperature 25.0 10 < th dose dependent rect. 11 23
370 150.58 temperature 30.0 90 < th dose dependent rect. 11 23
371 150.59 temperature 25.0 10 < th dose dependent rect. 15 23
375 150.62 temperature 25.0 10 < th dose dependent rect. 9 23
378 150.63 temperature 25.0 10 < th dose dependent rect. 17 23
383 150.65 temperature 25.0 10 < th dose independent rect. 12 16
395 150.73 temperature 30.0 30 < th dose independent rect. 3 23
413 150.86 temperature 30.0 10 < th dose dependent rect. 12 16
418 150.90 wind 1.0 14400 < th dose dependent rect. 10 2
440 151.01 temperature 15.0 90 > th dose dependent rect. 8 17
454 151.09 wind 3.0 43200 < th dose independent rect. 1 1
468 151.14 atmosphere 1015.0 14400 > th dose dependent rect. 23 1
472 151.15 wind 1.0 10 < th dose independent rect. 6 21
477 151.17 radiation 10.0 30 < th dose dependent rect. 3 23
478 151.18 atmosphere 1015.0 14400 > th dose dependent rect. 18 6
482 151.20 radiation 1.0 14400 > th dose independent rect. 15 16
498 151.24 radiation 40.0 14400 < th dose dependent rect. 18 2
501 151.25 radiation 1.0 14400 > th dose independent rect. 9 22
508 151.26 radiation 1.0 14400 > th dose independent rect. 18 23
510 151.27 radiation 1.0 14400 > th dose independent rect. 4 13
512 151.27 radiation 1.0 14400 < th dose independent rect. 3 14
527 151.27 temperature 30.0 90 < th dose dependent rect. 13 14
543 151.30 radiation 1.0 14400 < th dose independent rect. 15 16
558 151.33 radiation 1.0 14400 < th dose independent rect. 9 22
576 151.36 radiation 40.0 43200 < th dose dependent rect. 18 10
578 151.36 temperature 25.0 10 < th dose dependent rect. 3 23
588 151.38 radiation 1.0 14400 > th dose independent rect. 18 13
614 151.42 radiation 1.0 14400 > th dose independent sin 12 NA
639 151.44 radiation 1.0 14400 > th dose independent rect. 14 22
649 151.45 radiation 1.0 14400 < th dose independent rect. 18 13
663 151.46 radiation 1.0 14400 > th dose independent no NA NA
664 151.46 atmosphere 1015.0 14400 > th dose independent rect. 14 9
808 151.51 radiation 1.0 14400 < th dose independent rect. 14 22
811 151.52 wind 3.0 43200 > th dose independent rect. 23 1
863 151.54 radiation 1.0 14400 < th dose independent sin 11 NA
865 151.54 radiation 1.0 14400 < th dose independent no NA NA
866 151.54 atmosphere 1015.0 43200 < th dose independent rect. 23 1
902 151.54 wind 1.0 43200 > th dose dependent rect. 23 1
907 151.55 radiation 1.0 14400 > th dose independent sin 1 NA
923 151.56 atmosphere 1015.0 14400 > th dose independent rect. 18 3
925 151.56 atmosphere 1015.0 14400 < th dose independent rect. 15 7
928 151.56 temperature 10.0 10 > th dose dependent no NA NA
936 151.57 radiation 1.0 14400 > th dose independent rect. 15 4
962 151.58 radiation 1.0 14400 < th dose independent sin 1 NA
973 151.59 atmosphere 1015.0 43200 > th dose independent rect. 23 1