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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0762400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Peroxidase2 precursor (EC 1.11.1.7).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.48 (0.0465) R2 : 0.542
β1 : -1.34 (0.177) R2dD : 0.0678 R2D : 0.0258
β2 : 1.17 (0.111) R2dC : 0.119 R2C : 0.142
β3 : 1.58 (0.151) R2dE : 0.145 R2E : 0.205
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.94 (0.106) R2dN8 : 0.126 R2N8 : 0.207
σ : 0.852
deviance : 335
__
_____
C
peak time of C : 23.8
E
wheather : temperature
threshold : 21.3
memory length : 953
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
331.09 0.855 5.48 -1.38 1.17 1.59 -0.987 0.0646 0.946 0.0168 21.29 944 -- --
330.68 0.847 5.48 -1.37 1.16 1.57 -1.01 -- 0.943 0.0917 21.33 907 -- --
334.66 0.852 5.49 -1.45 1.18 1.58 -- -0.373 0.925 23.8 21.24 961 -- --
335 0.852 5.48 -1.34 1.17 1.58 -- -- 0.94 23.8 21.3 953 -- --
415.7 0.95 5.48 -1.46 -- 1.91 -- -0.122 0.859 -- 21.31 901 -- --
410.94 0.95 5.39 -0.784 1.42 -- -1.11 -- 1.37 23.9 -- -- -- --
416.13 0.955 5.39 -0.738 1.42 -- -- -- 1.38 23.7 -- -- -- --
415.74 0.95 5.47 -1.43 -- 1.92 -- -- 0.866 -- 21.34 901 -- --
377.85 0.905 5.45 -- 1.17 1.36 -- -- 1.13 23.9 21.4 871 -- --
543.15 1.09 5.36 -0.697 -- -- -- -- 1.4 -- -- -- -- --
430.49 0.971 5.37 -- 1.41 -- -- -- 1.46 23.7 -- -- -- --
460.22 0.999 5.41 -- -- 1.44 -- -- 1.09 -- 22.2 882 -- --
555.97 1.1 5.34 -- -- -- -- -- 1.47 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 335.22 temperature 20 1440 > th dose independent rect. 18 10
7 336.15 temperature 20 1440 < th dose independent rect. 18 10
15 336.79 temperature 20 1440 < th dose independent rect. 19 7
24 337.23 temperature 25 720 < th dose dependent rect. 17 19
44 337.80 temperature 20 720 > th dose independent rect. 2 22
46 337.82 temperature 25 1440 < th dose dependent rect. 21 2
50 337.89 temperature 20 1440 > th dose independent sin 13 NA
97 338.77 temperature 20 1440 < th dose independent sin 13 NA
148 339.62 temperature 25 720 < th dose dependent rect. 21 23
154 339.70 temperature 20 720 > th dose independent rect. 20 23
183 340.02 temperature 25 720 < th dose dependent no NA NA
207 340.21 temperature 25 720 < th dose dependent rect. 24 23
222 340.37 temperature 20 720 < th dose independent rect. 18 22
238 340.51 temperature 20 720 > th dose independent rect. 12 23
249 340.62 temperature 25 720 < th dose dependent rect. 8 23
255 340.65 temperature 25 720 < th dose dependent sin 10 NA
258 340.68 temperature 20 720 > th dose independent rect. 6 23
290 340.89 temperature 20 720 > th dose independent no NA NA
299 340.92 temperature 20 720 > th dose independent rect. 23 23
306 340.95 temperature 25 720 < th dose dependent rect. 5 23
324 341.09 temperature 20 720 < th dose independent rect. 2 22
331 341.16 temperature 20 720 < th dose independent rect. 14 21
332 341.16 temperature 20 720 > th dose independent rect. 17 23
360 341.33 temperature 20 720 > th dose independent rect. 14 23
409 341.59 temperature 20 720 > th dose independent rect. 10 23
449 341.83 temperature 20 720 < th dose independent rect. 11 23
485 342.00 temperature 20 720 < th dose independent no NA NA
551 342.42 temperature 20 720 < th dose independent rect. 8 23
556 342.45 temperature 20 720 < th dose independent rect. 23 23
628 342.87 temperature 20 720 < th dose independent rect. 5 23
745 343.55 temperature 15 1440 > th dose dependent rect. 21 2
828 344.06 temperature 10 720 > th dose dependent rect. 20 15
917 344.67 temperature 10 720 > th dose dependent sin 10 NA
936 344.81 temperature 15 1440 > th dose dependent rect. 20 8
965 344.95 temperature 25 1440 < th dose dependent rect. 1 2
998 345.06 temperature 15 720 > th dose dependent rect. 20 13