Os03g0762200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os03g0762200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 297.96 | 0.811 | 4.46 | 2.42 | 1.32 | 1.03 | 0.694 | 0.806 | 0.981 | 13.9 | 15.96 | 8 | 6 | 21.5 |
| 301.99 | 0.809 | 4.46 | 2.42 | 1.32 | 1.03 | 0.694 | -- | 0.981 | 13.9 | 15.96 | 8 | 6 | 21.5 |
| 299.46 | 0.806 | 4.45 | 2.42 | 1.32 | 1.04 | -- | 0.57 | 0.973 | 13.8 | 15.98 | 7 | 6 | 21.6 |
| 301.29 | 0.808 | 4.45 | 2.43 | 1.33 | 1.04 | -- | -- | 0.978 | 13.9 | 15.98 | 7 | 6.02 | 21.7 |
| 355.94 | 0.879 | 4.45 | 2.3 | -- | 1.18 | -- | 0.995 | 1.02 | -- | 58.91 | 35 | 5.9 | 20.7 |
| 355.47 | 0.884 | 4.45 | 2.29 | 1.26 | -- | 1.25 | -- | 1.12 | 16.9 | -- | -- | -- | -- |
| 359.42 | 0.888 | 4.44 | 2.3 | 1.26 | -- | -- | -- | 1.12 | 16.8 | -- | -- | -- | -- |
| 359.24 | 0.883 | 4.45 | 2.29 | -- | 1.19 | -- | -- | 1.02 | -- | 58.93 | 34 | 5.9 | 20.7 |
| 461.19 | 1 | 4.46 | -- | 1.22 | 0.96 | -- | -- | 0.973 | 13.8 | 15.97 | 7 | 6.01 | 21.7 |
| 444.02 | 0.985 | 4.43 | 2.25 | -- | -- | -- | -- | 1.09 | -- | -- | -- | -- | -- |
| 498.74 | 1.04 | 4.5 | -- | 1.22 | -- | -- | -- | 0.867 | 16.8 | -- | -- | -- | -- |
| 495.14 | 1.04 | 4.47 | -- | -- | 1.13 | -- | -- | 0.823 | -- | 60 | 51 | 5.77 | 20.7 |
| 577.74 | 1.12 | 4.49 | -- | -- | -- | -- | -- | 0.841 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 303.07 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 6 | 21 |
| 5 | 306.67 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 6 | 6 |
| 6 | 307.10 | radiation | 20.0 | 10 | < th | dose independent | rect. | 6 | 21 |
| 22 | 310.69 | radiation | 20.0 | 10 | < th | dose independent | rect. | 6 | 7 |
| 50 | 315.16 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 6 | 11 |
| 59 | 315.99 | radiation | 20.0 | 10 | < th | dose independent | rect. | 6 | 18 |
| 80 | 317.58 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 5 | 2 |
| 127 | 319.45 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 6 | 5 |
| 135 | 319.68 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 144 | 320.19 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 172 | 321.29 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 4 | 4 |
| 178 | 321.36 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 1 | 10 |
| 188 | 321.55 | atmosphere | 995.0 | 720 | > th | dose dependent | rect. | 21 | 4 |
| 213 | 322.10 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 23 | 11 |
| 216 | 322.22 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 223 | 322.40 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 230 | 322.47 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 19 | 15 |
| 268 | 323.40 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 6 | 5 |
| 276 | 323.53 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 15 | 20 |
| 283 | 323.59 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 301 | 323.78 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 13 | 14 |
| 309 | 323.91 | atmosphere | 995.0 | 720 | > th | dose dependent | rect. | 23 | 1 |
| 310 | 323.91 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 6 | 12 |
| 319 | 324.03 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 21 | 13 |
| 327 | 324.15 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 333 | 324.22 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 5 | 3 |
| 337 | 324.26 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 6 | 1 |
| 357 | 324.60 | humidity | 80.0 | 10 | > th | dose independent | rect. | 6 | 12 |
| 370 | 324.75 | humidity | 80.0 | 10 | > th | dose independent | rect. | 6 | 8 |
| 385 | 324.86 | humidity | 80.0 | 10 | > th | dose independent | rect. | 6 | 6 |
| 404 | 325.02 | humidity | 80.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 410 | 325.04 | wind | 1.0 | 270 | > th | dose independent | rect. | 4 | 5 |
| 412 | 325.07 | wind | 5.0 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 421 | 325.15 | wind | 5.0 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 432 | 325.28 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 444 | 325.38 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 19 | 15 |
| 465 | 325.53 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 6 | 20 |
| 491 | 325.72 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 17 | 22 |
| 519 | 325.89 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 19 | 6 |
| 530 | 325.98 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 18 | 17 |
| 538 | 326.01 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 585 | 326.17 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 15 | NA |
| 590 | 326.19 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 10 | 9 |
| 623 | 326.22 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 8 | NA |
| 646 | 326.27 | temperature | 30.0 | 1440 | > th | dose dependent | sin | 22 | NA |
| 689 | 326.32 | temperature | 30.0 | 1440 | > th | dose dependent | no | NA | NA |
| 785 | 326.33 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 786 | 326.34 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 14 | 23 |
| 794 | 326.38 | wind | 1.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 806 | 326.41 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 19 | 15 |
| 892 | 326.61 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 12 |
| 894 | 326.61 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 12 |
| 896 | 326.62 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 8 | 7 |
| 905 | 326.65 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 20 | 20 |
| 916 | 326.68 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 12 |
| 919 | 326.70 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 7 | 3 |
| 922 | 326.72 | wind | 1.0 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 934 | 326.78 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 3 |
| 943 | 326.81 | radiation | 20.0 | 10 | < th | dose independent | rect. | 6 | 14 |
| 960 | 326.89 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 6 |
| 966 | 326.90 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 994 | 327.01 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 18 | 17 |