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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0761300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.26 (0.0321) R2 : 0.846
β1 : 1.54 (0.118) R2dD : 0.0601 R2D : 0.0617
β2 : 3.63 (0.0801) R2dC : 0.701 R2C : 0.681
β3 : 1.86 (0.113) R2dE : 0.0935 R2E : 0.0902
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.366 (0.0684) R2dN8 : 0.0125 R2N8 : -0.00913
σ : 0.599
deviance : 165.43
__
_____
C
peak time of C : 20.7
E
wheather : wind
threshold : 9.393
memory length : 353
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 9.67
open length of G : 4.87

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
157.85 0.59 5.27 1.57 3.63 1.95 1.31 -1.25 0.338 20.7 8.665 317 9.91 5.05
159.37 0.588 5.26 1.54 3.61 1.91 1.34 -- 0.384 20.8 9.665 347 9.67 4.97
162.81 0.594 5.28 1.54 3.6 2 -- -1.43 0.338 20.7 8.873 345 9.92 4.73
165.43 0.599 5.26 1.54 3.63 1.86 -- -- 0.366 20.7 9.393 353 9.67 4.87
225.57 0.699 5.2 0.918 -- 4.18 -- -2.18 0.419 -- 13.21 806 10.1 5.09
192.34 0.65 5.27 1.73 3.86 -- 1.14 -- 0.339 19.7 -- -- -- --
195.97 0.656 5.27 1.7 3.86 -- -- -- 0.341 19.6 -- -- -- --
185.42 0.634 5.17 1.5 -- 3.72 -- -- 0.312 -- 25.92 788 10 6.22
220.2 0.691 5.29 -- 3.54 2.46 -- -- 0.201 21.1 7.845 429 9.35 4.75
998.74 1.48 5.18 1.65 -- -- -- -- 0.283 -- -- -- -- --
272.3 0.772 5.31 -- 3.85 -- -- -- 0.151 19.7 -- -- -- --
238.14 0.719 5.18 -- -- 4.17 -- -- 0.257 -- 15.01 780 9.87 6.87
1070.45 1.53 5.22 -- -- -- -- -- 0.1 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 159.72 wind 9.0 270 < th dose dependent rect. 10 5
3 160.63 wind 7.0 270 < th dose independent rect. 10 6
4 160.64 wind 7.0 270 < th dose independent rect. 9 8
5 160.74 wind 7.0 270 < th dose independent rect. 9 21
12 162.08 wind 7.0 270 < th dose independent rect. 10 18
17 162.85 temperature 15.0 270 > th dose independent rect. 17 16
18 162.89 temperature 15.0 1440 > th dose independent rect. 7 17
21 163.19 radiation 1.0 270 < th dose dependent rect. 20 11
25 163.40 temperature 15.0 270 > th dose independent rect. 16 18
33 163.99 radiation 40.0 270 < th dose independent rect. 5 16
34 164.02 radiation 1.0 270 < th dose independent rect. 20 11
43 164.46 temperature 10.0 270 > th dose dependent rect. 10 5
49 165.08 temperature 10.0 270 > th dose dependent rect. 9 7
67 165.65 radiation 30.0 270 < th dose independent rect. 6 3
71 165.70 radiation 1.0 270 < th dose dependent rect. 20 18
73 165.75 atmosphere 1010.0 270 < th dose independent rect. 15 8
82 165.93 humidity 90.0 270 < th dose independent rect. 9 7
83 165.93 radiation 1.0 270 < th dose dependent sin 10 NA
86 166.06 humidity 50.0 270 > th dose dependent rect. 5 5
97 166.19 radiation 40.0 270 < th dose dependent rect. 6 3
98 166.22 humidity 70.0 270 > th dose independent rect. 5 5
105 166.38 humidity 50.0 270 > th dose dependent rect. 20 9
108 166.43 wind 7.0 270 < th dose independent rect. 20 9
109 166.44 humidity 50.0 270 > th dose dependent rect. 6 3
111 166.52 temperature 15.0 270 > th dose independent rect. 10 6
112 166.52 atmosphere 1015.0 270 < th dose independent rect. 5 16
119 166.64 temperature 30.0 90 < th dose dependent rect. 23 8
123 166.66 temperature 10.0 270 > th dose independent rect. 20 9
124 166.66 temperature 30.0 270 < th dose independent rect. 20 9
125 166.66 humidity 50.0 270 > th dose independent rect. 20 9
128 166.66 atmosphere 995.0 270 > th dose independent rect. 20 9
129 166.66 radiation 20.0 270 < th dose independent rect. 20 9
132 166.66 temperature 10.0 270 > th dose independent rect. 5 15
151 166.79 radiation 40.0 270 < th dose dependent rect. 5 15
152 166.80 atmosphere 1015.0 270 < th dose independent rect. 16 18
157 166.86 radiation 1.0 270 > th dose independent rect. 5 4
187 166.99 temperature 30.0 270 < th dose independent rect. 5 5
191 167.04 atmosphere 995.0 270 > th dose dependent rect. 21 8
196 167.10 wind 9.0 270 < th dose dependent rect. 10 19
203 167.24 radiation 30.0 270 < th dose independent rect. 15 19
204 167.26 precipitation 0.1 270 < th dose independent rect. 5 15
205 167.26 precipitation 0.1 270 < th dose dependent rect. 5 15
207 167.27 radiation 1.0 270 < th dose independent rect. 20 18
208 167.27 humidity 50.0 90 > th dose dependent rect. 22 9
217 167.41 temperature 15.0 270 > th dose independent rect. 9 20
222 167.53 humidity 70.0 270 > th dose independent rect. 6 3
225 167.57 radiation 1.0 270 < th dose independent sin 10 NA
232 167.61 precipitation 0.1 270 < th dose independent rect. 20 9
234 167.61 precipitation 0.1 270 < th dose dependent rect. 20 9
258 167.69 radiation 40.0 270 < th dose dependent rect. 5 5
259 167.70 precipitation 0.1 270 < th dose independent rect. 5 4
260 167.70 precipitation 0.1 270 < th dose dependent rect. 5 4
262 167.71 precipitation 0.1 270 < th dose independent rect. 4 6
263 167.71 precipitation 0.1 270 < th dose dependent rect. 4 6
269 167.76 wind 9.0 270 < th dose independent rect. 5 4
270 167.76 temperature 10.0 270 > th dose independent rect. 5 4
273 167.76 atmosphere 995.0 270 > th dose independent rect. 5 4
274 167.76 atmosphere 1015.0 270 < th dose independent rect. 5 4
279 167.81 temperature 10.0 270 > th dose dependent rect. 17 16
281 167.83 temperature 10.0 270 > th dose independent rect. 4 6
282 167.83 atmosphere 995.0 270 > th dose independent rect. 4 6
283 167.83 atmosphere 1015.0 270 < th dose independent rect. 4 6
284 167.83 temperature 10.0 270 > th dose independent rect. 10 18
286 167.86 wind 9.0 270 < th dose independent rect. 4 6
324 168.03 precipitation 0.1 270 < th dose independent rect. 10 6
325 168.03 precipitation 0.1 270 < th dose dependent rect. 10 6
327 168.04 humidity 50.0 10 > th dose dependent rect. 23 9
344 168.15 atmosphere 1015.0 270 < th dose independent rect. 10 6
361 168.25 atmosphere 995.0 270 > th dose independent rect. 5 15
363 168.27 radiation 1.0 270 > th dose independent sin 10 NA
369 168.29 atmosphere 1015.0 270 < th dose dependent rect. 10 5
375 168.35 atmosphere 1015.0 270 < th dose independent rect. 17 16
376 168.38 atmosphere 995.0 270 > th dose independent rect. 16 18
379 168.39 precipitation 0.1 270 < th dose independent rect. 16 18
380 168.39 precipitation 0.1 270 < th dose dependent rect. 16 18
384 168.42 atmosphere 995.0 90 > th dose dependent rect. 23 7
419 168.72 wind 9.0 270 < th dose independent rect. 16 18
433 168.83 humidity 50.0 270 > th dose independent rect. 16 18
439 168.87 atmosphere 995.0 270 > th dose independent rect. 10 5
450 168.90 precipitation 0.1 270 < th dose independent rect. 10 18
452 168.90 precipitation 0.1 270 < th dose dependent rect. 10 18
455 168.93 radiation 1.0 270 > th dose independent rect. 10 5
473 169.01 wind 7.0 270 < th dose independent rect. 23 15
503 169.14 humidity 60.0 10 > th dose independent rect. 7 16
535 169.32 wind 9.0 270 < th dose independent rect. 5 15
583 169.54 atmosphere 995.0 90 > th dose independent rect. 7 15
588 169.56 temperature 15.0 270 > th dose independent rect. 15 10
591 169.60 radiation 40.0 270 < th dose dependent rect. 15 19
592 169.61 temperature 15.0 270 > th dose independent rect. 15 8
603 169.63 humidity 90.0 270 < th dose independent rect. 11 3
615 169.68 radiation 40.0 10 < th dose dependent rect. 23 9
621 169.73 temperature 10.0 270 > th dose dependent rect. 5 4
629 169.78 wind 1.0 270 > th dose independent rect. 10 6
630 169.78 temperature 30.0 90 < th dose independent rect. 6 16
646 169.87 atmosphere 1010.0 270 < th dose independent rect. 11 3
649 169.88 temperature 30.0 270 < th dose independent rect. 16 18
690 170.11 humidity 50.0 270 > th dose independent rect. 10 5
704 170.18 wind 1.0 90 > th dose independent rect. 7 15
720 170.24 wind 9.0 1440 < th dose independent rect. 24 7
745 170.38 humidity 90.0 270 < th dose dependent rect. 10 5
757 170.43 atmosphere 1015.0 270 < th dose dependent rect. 11 3
785 170.53 wind 7.0 270 < th dose independent rect. 1 14
788 170.54 temperature 15.0 270 > th dose independent rect. 8 23
789 170.54 temperature 30.0 90 < th dose dependent rect. 7 15
797 170.59 atmosphere 1015.0 270 < th dose independent rect. 14 21
814 170.64 radiation 1.0 270 > th dose dependent rect. 10 5
829 170.71 temperature 15.0 1440 > th dose independent rect. 7 6
836 170.72 humidity 50.0 270 > th dose dependent rect. 7 1
873 170.82 temperature 30.0 10 < th dose dependent rect. 8 15
894 170.91 precipitation 0.1 270 < th dose independent rect. 11 3
897 170.91 precipitation 0.1 270 < th dose dependent rect. 11 3
903 170.95 humidity 50.0 270 > th dose dependent rect. 5 15
913 170.98 atmosphere 995.0 270 > th dose independent rect. 11 3
916 170.98 wind 9.0 90 < th dose dependent rect. 22 9
920 171.01 atmosphere 995.0 10 > th dose dependent rect. 7 16
922 171.02 radiation 40.0 270 < th dose dependent rect. 7 1
930 171.06 wind 1.0 90 > th dose independent rect. 7 4
943 171.10 atmosphere 995.0 90 > th dose dependent rect. 6 16
982 171.20 atmosphere 1000.0 10 > th dose independent rect. 23 8
985 171.21 wind 9.0 270 < th dose dependent rect. 5 4