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Os03g0761200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ankyrin repeat containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.02 (0.0378) R2 : 0.631
β1 : 1.96 (0.14) R2dD : 0.169 R2D : 0.106
β2 : 2.12 (0.0989) R2dC : 0.377 R2C : 0.407
β3 : -1.61 (0.146) R2dE : 0.102 R2E : 0.103
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.144 (0.0807) R2dN8 : 0.00347 R2N8 : -0.00584
σ : 0.706
deviance : 230.03
__
_____
C
peak time of C : 17.3
E
wheather : humidity
threshold : 82.65
memory length : 1167
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
228.33 0.71 7.02 2.06 2.11 -1.67 0.638 0.92 0.144 17.2 81.01 1169 -- --
229.17 0.705 7.03 1.96 2.12 -1.61 0.584 -- 0.142 17.3 82.78 1161 -- --
229.21 0.705 7.01 2.04 2.12 -1.67 -- 0.844 0.155 17.2 82.39 1169 -- --
230.03 0.706 7.02 1.96 2.12 -1.61 -- -- 0.144 17.3 82.65 1167 -- --
451.15 0.995 6.98 1.61 -- 1.9 -- 0.66 0.187 -- 86.73 1231 -- --
282.51 0.788 7.01 1.72 2.24 -- 0.713 -- 0.181 16.7 -- -- -- --
283.85 0.789 7.01 1.72 2.25 -- -- -- 0.185 16.7 -- -- -- --
444.92 0.987 6.99 1.66 -- 2.02 -- -- 0.114 -- 153.8 4809 -- --
322.62 0.837 7.05 -- 2.07 -1.45 -- -- 0.0404 17.1 96 1212 -- --
552.7 1.1 6.99 1.64 -- -- -- -- 0.126 -- -- -- -- --
362.16 0.89 7.05 -- 2.22 -- -- -- -0.0072 16.7 -- -- -- --
517.97 1.06 7.03 -- -- 2 -- -- -0.0707 -- 153.8 4809 -- --
623.47 1.17 7.03 -- -- -- -- -- -0.0558 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 221.17 wind 5.0 270 < th dose independent rect. 1 6
2 221.51 humidity 50.0 270 > th dose dependent rect. 18 8
4 222.74 wind 5.0 90 < th dose independent rect. 3 5
7 223.10 humidity 50.0 720 > th dose dependent rect. 17 10
11 223.59 wind 7.0 10 < th dose dependent rect. 4 5
13 223.72 radiation 30.0 90 < th dose independent rect. 3 6
19 224.22 wind 9.0 90 < th dose dependent rect. 3 6
23 224.58 precipitation 0.1 90 < th dose independent rect. 3 6
24 224.58 precipitation 0.1 90 < th dose dependent rect. 3 6
28 224.96 humidity 80.0 720 < th dose dependent rect. 18 14
30 225.13 precipitation 0.1 270 < th dose independent rect. 3 2
31 225.13 precipitation 0.1 270 < th dose dependent rect. 3 2
40 225.88 humidity 90.0 720 < th dose dependent rect. 20 1
41 225.94 humidity 80.0 720 < th dose dependent rect. 19 3
43 226.09 precipitation 0.1 10 < th dose independent rect. 4 5
44 226.09 precipitation 0.1 10 < th dose dependent rect. 4 5
48 226.30 temperature 30.0 90 < th dose independent rect. 3 6
51 226.34 wind 5.0 10 < th dose independent rect. 4 5
67 227.02 temperature 10.0 10 > th dose independent rect. 4 5
69 227.02 temperature 30.0 10 < th dose independent rect. 4 5
70 227.02 humidity 50.0 10 > th dose independent rect. 4 5
72 227.02 atmosphere 995.0 10 > th dose independent rect. 4 5
73 227.02 atmosphere 1015.0 10 < th dose independent rect. 4 5
74 227.02 humidity 60.0 90 > th dose independent rect. 3 6
75 227.02 temperature 10.0 10 > th dose independent rect. 9 19
77 227.09 temperature 25.0 270 < th dose independent rect. 4 1
81 227.19 humidity 90.0 720 < th dose dependent rect. 18 6
84 227.31 precipitation 0.1 270 < th dose independent rect. 1 6
85 227.31 precipitation 0.1 270 < th dose dependent rect. 1 6
91 227.49 temperature 10.0 90 > th dose independent rect. 3 6
94 227.49 atmosphere 995.0 90 > th dose independent rect. 3 6
95 227.49 atmosphere 1015.0 90 < th dose independent rect. 3 6
96 227.49 temperature 10.0 90 > th dose independent rect. 9 18
101 227.57 precipitation 0.1 270 < th dose independent rect. 14 16
102 227.57 precipitation 0.1 270 < th dose dependent rect. 14 16
103 227.59 wind 9.0 270 < th dose dependent rect. 3 3
110 227.76 humidity 80.0 720 < th dose dependent rect. 18 9
140 228.17 atmosphere 995.0 10 > th dose independent rect. 9 19
151 228.22 wind 9.0 270 < th dose dependent rect. 1 6
152 228.24 radiation 40.0 10 < th dose independent rect. 4 5
161 228.45 radiation 30.0 90 < th dose independent rect. 3 8
193 229.13 wind 9.0 90 < th dose independent rect. 9 18
204 229.37 wind 9.0 10 < th dose independent rect. 9 19
210 229.51 radiation 20.0 270 < th dose independent rect. 1 7
212 229.52 temperature 10.0 270 > th dose independent rect. 3 3
215 229.52 humidity 50.0 270 > th dose independent rect. 3 3
218 229.52 atmosphere 995.0 270 > th dose independent rect. 3 3
219 229.52 atmosphere 1015.0 270 < th dose independent rect. 3 3
220 229.52 radiation 20.0 270 < th dose independent rect. 3 3
223 229.52 temperature 10.0 270 > th dose independent rect. 6 21
230 229.74 humidity 80.0 720 < th dose independent rect. 19 2
252 230.06 radiation 40.0 270 < th dose dependent rect. 3 3
254 230.09 radiation 40.0 270 < th dose dependent rect. 1 7
260 230.17 atmosphere 1000.0 270 > th dose independent rect. 19 7
273 230.36 humidity 50.0 720 > th dose dependent sin 14 NA
275 230.39 radiation 1.0 270 < th dose independent rect. 3 2
277 230.39 temperature 10.0 270 > th dose independent rect. 1 6
280 230.39 humidity 50.0 270 > th dose independent rect. 1 6
282 230.39 atmosphere 995.0 270 > th dose independent rect. 1 6
283 230.39 atmosphere 1015.0 270 < th dose independent rect. 1 6
295 230.44 precipitation 0.1 90 < th dose independent rect. 9 18
296 230.44 precipitation 0.1 90 < th dose dependent rect. 9 18
310 230.69 radiation 40.0 270 < th dose dependent rect. 2 5
340 230.86 precipitation 0.1 270 < th dose independent rect. 2 16
341 230.86 precipitation 0.1 270 < th dose dependent rect. 2 16
347 231.00 atmosphere 995.0 270 > th dose independent rect. 6 21
368 231.24 humidity 90.0 720 < th dose dependent sin 13 NA
381 231.47 radiation 1.0 270 < th dose dependent rect. 7 19
400 231.72 wind 9.0 270 < th dose independent rect. 6 21
408 231.82 precipitation 0.1 10 < th dose independent rect. 9 19
409 231.82 precipitation 0.1 10 < th dose dependent rect. 9 19
437 231.87 radiation 1.0 270 < th dose dependent rect. 5 21
457 232.07 radiation 1.0 270 < th dose dependent rect. 17 9
459 232.10 wind 7.0 270 < th dose independent rect. 14 16
468 232.20 temperature 30.0 270 < th dose dependent rect. 3 2
469 232.22 atmosphere 995.0 10 > th dose dependent rect. 4 5
475 232.24 humidity 50.0 720 > th dose dependent rect. 16 17
505 232.55 radiation 1.0 270 < th dose dependent rect. 12 14
508 232.57 radiation 1.0 270 < th dose independent rect. 17 9
523 232.82 atmosphere 1000.0 10 > th dose independent rect. 21 7
535 232.96 temperature 10.0 10 > th dose dependent rect. 4 5
537 233.02 radiation 1.0 270 < th dose independent rect. 8 18
558 233.23 humidity 50.0 270 > th dose dependent rect. 3 2
581 233.35 temperature 10.0 270 > th dose independent rect. 6 8
582 233.35 atmosphere 995.0 270 > th dose independent rect. 6 8
583 233.35 atmosphere 1015.0 270 < th dose independent rect. 6 8
584 233.35 temperature 10.0 270 > th dose independent rect. 14 16
586 233.36 atmosphere 1015.0 10 < th dose independent rect. 9 19
589 233.43 precipitation 0.1 270 < th dose independent rect. 6 8
590 233.43 precipitation 0.1 270 < th dose dependent rect. 6 8
633 233.76 humidity 50.0 90 > th dose dependent rect. 3 6
643 233.84 wind 9.0 270 < th dose independent rect. 6 8
683 233.98 radiation 1.0 270 < th dose independent rect. 12 14
685 233.99 atmosphere 1005.0 10 > th dose independent rect. 4 5
710 234.18 temperature 15.0 270 > th dose independent rect. 2 16
716 234.20 wind 9.0 270 < th dose independent rect. 2 16
738 234.34 wind 1.0 270 > th dose independent rect. 1 6
745 234.39 humidity 60.0 270 > th dose independent rect. 18 8
746 234.40 atmosphere 1005.0 270 > th dose independent rect. 3 3
751 234.44 atmosphere 1015.0 90 < th dose independent rect. 8 19
778 234.63 precipitation 0.1 270 < th dose independent rect. 6 20
779 234.63 precipitation 0.1 270 < th dose dependent rect. 6 20
784 234.67 temperature 30.0 270 < th dose independent rect. 18 8
793 234.74 precipitation 0.1 10 < th dose independent rect. 16 17
794 234.74 precipitation 0.1 10 < th dose dependent rect. 16 17
797 234.76 temperature 10.0 270 > th dose independent rect. 18 8
803 234.76 atmosphere 1015.0 270 < th dose independent rect. 2 16
833 235.05 wind 9.0 270 < th dose independent rect. 18 8
834 235.05 radiation 40.0 270 < th dose independent rect. 14 16
835 235.05 humidity 50.0 10 > th dose independent rect. 9 19
840 235.09 temperature 30.0 90 < th dose dependent rect. 3 6
859 235.12 radiation 10.0 1440 > th dose independent rect. 9 22
922 235.55 humidity 80.0 720 > th dose independent rect. 16 11
925 235.55 precipitation 0.1 270 < th dose independent rect. 10 23
928 235.55 precipitation 0.1 270 < th dose dependent rect. 10 23
942 235.67 precipitation 0.1 10 < th dose independent rect. 14 19
943 235.67 precipitation 0.1 10 < th dose dependent rect. 14 19
998 236.02 precipitation 0.1 270 < th dose independent rect. 11 10
999 236.02 precipitation 0.1 270 < th dose dependent rect. 11 10